void drawRoiLabel(Graphics g, int index, Roi roi) {
   Rectangle r = roi.getBounds();
   int x = screenX(r.x);
   int y = screenY(r.y);
   double mag = getMagnification();
   int width = (int) (r.width * mag);
   int height = (int) (r.height * mag);
   int size = width > 40 && height > 40 ? 12 : 9;
   if (font != null) {
     g.setFont(font);
     size = font.getSize();
   } else if (size == 12) g.setFont(largeFont);
   else g.setFont(smallFont);
   boolean drawingList = index >= LIST_OFFSET;
   if (drawingList) index -= LIST_OFFSET;
   String label = "" + (index + 1);
   if (drawNames && roi.getName() != null) label = roi.getName();
   FontMetrics metrics = g.getFontMetrics();
   int w = metrics.stringWidth(label);
   x = x + width / 2 - w / 2;
   y = y + height / 2 + Math.max(size / 2, 6);
   int h = metrics.getAscent() + metrics.getDescent();
   if (bgColor != null) {
     g.setColor(bgColor);
     g.fillRoundRect(x - 1, y - h + 2, w + 1, h - 3, 5, 5);
   }
   if (!drawingList && labelRects != null && index < labelRects.length)
     labelRects[index] = new Rectangle(x - 1, y - h + 2, w + 1, h);
   g.setColor(labelColor);
   g.drawString(label, x, y - 2);
   g.setColor(defaultColor);
 }
 public void mouseMoved(MouseEvent e) {
   // if (ij==null) return;
   int sx = e.getX();
   int sy = e.getY();
   int ox = offScreenX(sx);
   int oy = offScreenY(sy);
   flags = e.getModifiers();
   setCursor(sx, sy, ox, oy);
   IJ.setInputEvent(e);
   Roi roi = imp.getRoi();
   if (roi != null
       && (roi.getType() == Roi.POLYGON
           || roi.getType() == Roi.POLYLINE
           || roi.getType() == Roi.ANGLE)
       && roi.getState() == roi.CONSTRUCTING) {
     PolygonRoi pRoi = (PolygonRoi) roi;
     pRoi.handleMouseMove(ox, oy);
   } else {
     if (ox < imageWidth && oy < imageHeight) {
       ImageWindow win = imp.getWindow();
       // Cursor must move at least 12 pixels before text
       // displayed using IJ.showStatus() is overwritten.
       if ((sx - sx2) * (sx - sx2) + (sy - sy2) * (sy - sy2) > 144) showCursorStatus = true;
       if (win != null && showCursorStatus) win.mouseMoved(ox, oy);
     } else IJ.showStatus("");
   }
 }
 /** Sets the cursor based on the current tool and cursor location. */
 public void setCursor(int sx, int sy, int ox, int oy) {
   xMouse = ox;
   yMouse = oy;
   mouseExited = false;
   Roi roi = imp.getRoi();
   ImageWindow win = imp.getWindow();
   if (win == null) return;
   if (IJ.spaceBarDown()) {
     setCursor(handCursor);
     return;
   }
   int id = Toolbar.getToolId();
   switch (Toolbar.getToolId()) {
     case Toolbar.MAGNIFIER:
       setCursor(moveCursor);
       break;
     case Toolbar.HAND:
       setCursor(handCursor);
       break;
     default: // selection tool
       if (id == Toolbar.SPARE1 || id >= Toolbar.SPARE2) {
         if (Prefs.usePointerCursor) setCursor(defaultCursor);
         else setCursor(crosshairCursor);
       } else if (roi != null && roi.getState() != roi.CONSTRUCTING && roi.isHandle(sx, sy) >= 0)
         setCursor(handCursor);
       else if (Prefs.usePointerCursor
           || (roi != null && roi.getState() != roi.CONSTRUCTING && roi.contains(ox, oy)))
         setCursor(defaultCursor);
       else setCursor(crosshairCursor);
   }
 }
 /** @deprecated replaced by ImagePlus.setOverlay(Shape, Color, BasicStroke) */
 public void setDisplayList(Shape shape, Color color, BasicStroke stroke) {
   if (shape == null) {
     setOverlay(null);
     return;
   }
   Roi roi = new ShapeRoi(shape);
   roi.setStrokeColor(color);
   roi.setStroke(stroke);
   Overlay list = new Overlay();
   list.add(roi);
   setOverlay(list);
 }
 void setRoiModState(MouseEvent e, Roi roi, int handle) {
   if (roi == null || (handle >= 0 && roi.modState == Roi.NO_MODS)) return;
   if (roi.state == Roi.CONSTRUCTING) return;
   int tool = Toolbar.getToolId();
   if (tool > Toolbar.FREEROI && tool != Toolbar.WAND && tool != Toolbar.POINT) {
     roi.modState = Roi.NO_MODS;
     return;
   }
   if (e.isShiftDown()) roi.modState = Roi.ADD_TO_ROI;
   else if (e.isAltDown()) roi.modState = Roi.SUBTRACT_FROM_ROI;
   else roi.modState = Roi.NO_MODS;
   // IJ.log("setRoiModState: "+roi.modState+" "+ roi.state);
 }
 public void mouseDragged(MouseEvent e) {
   int x = e.getX();
   int y = e.getY();
   xMouse = offScreenX(x);
   yMouse = offScreenY(y);
   flags = e.getModifiers();
   // IJ.log("mouseDragged: "+flags);
   if (flags == 0) // workaround for Mac OS 9 bug
   flags = InputEvent.BUTTON1_MASK;
   if (Toolbar.getToolId() == Toolbar.HAND || IJ.spaceBarDown()) scroll(x, y);
   else {
     IJ.setInputEvent(e);
     Roi roi = imp.getRoi();
     if (roi != null) roi.handleMouseDrag(x, y, flags);
   }
 }
 protected void handleRoiMouseDown(MouseEvent e) {
   int sx = e.getX();
   int sy = e.getY();
   int ox = offScreenX(sx);
   int oy = offScreenY(sy);
   Roi roi = imp.getRoi();
   int handle = roi != null ? roi.isHandle(sx, sy) : -1;
   boolean multiPointMode =
       roi != null
           && (roi instanceof PointRoi)
           && handle == -1
           && Toolbar.getToolId() == Toolbar.POINT
           && Toolbar.getMultiPointMode();
   if (multiPointMode) {
     imp.setRoi(((PointRoi) roi).addPoint(ox, oy));
     return;
   }
   setRoiModState(e, roi, handle);
   if (roi != null) {
     if (handle >= 0) {
       roi.mouseDownInHandle(handle, sx, sy);
       return;
     }
     Rectangle r = roi.getBounds();
     int type = roi.getType();
     if (type == Roi.RECTANGLE
         && r.width == imp.getWidth()
         && r.height == imp.getHeight()
         && roi.getPasteMode() == Roi.NOT_PASTING
         && !(roi instanceof ImageRoi)) {
       imp.killRoi();
       return;
     }
     if (roi.contains(ox, oy)) {
       if (roi.modState == Roi.NO_MODS) roi.handleMouseDown(sx, sy);
       else {
         imp.killRoi();
         imp.createNewRoi(sx, sy);
       }
       return;
     }
     if ((type == Roi.POLYGON || type == Roi.POLYLINE || type == Roi.ANGLE)
         && roi.getState() == roi.CONSTRUCTING) return;
     int tool = Toolbar.getToolId();
     if ((tool == Toolbar.POLYGON || tool == Toolbar.POLYLINE || tool == Toolbar.ANGLE)
         && !(IJ.shiftKeyDown() || IJ.altKeyDown())) {
       imp.killRoi();
       return;
     }
   }
   imp.createNewRoi(sx, sy);
 }
 void drawRoi(Graphics g, Roi roi, int index) {
   int type = roi.getType();
   ImagePlus imp2 = roi.getImage();
   roi.setImage(imp);
   Color saveColor = roi.getStrokeColor();
   if (saveColor == null) roi.setStrokeColor(defaultColor);
   if (roi instanceof TextRoi) ((TextRoi) roi).drawText(g);
   else roi.drawOverlay(g);
   roi.setStrokeColor(saveColor);
   if (index >= 0) {
     if (roi == currentRoi) g.setColor(Roi.getColor());
     else g.setColor(defaultColor);
     drawRoiLabel(g, index, roi);
   }
   if (imp2 != null) roi.setImage(imp2);
   else roi.setImage(null);
 }
Exemple #9
0
 public void run(String arg) {
   imp = IJ.getImage();
   Roi roi = imp.getRoi();
   if (roi != null && !roi.isArea()) imp.killRoi(); // ignore any line selection
   ImageProcessor ip = imp.getProcessor();
   if (!showDialog(ip)) return;
   if (ip.getWidth() > 1 && ip.getHeight() > 1) ip.setInterpolate(interpolate);
   else ip.setInterpolate(false);
   ip.setBackgroundValue(bgValue);
   imp.startTiming();
   try {
     if (newWindow && imp.getStackSize() > 1 && processStack) createNewStack(imp, ip);
     else scale(ip);
   } catch (OutOfMemoryError o) {
     IJ.outOfMemory("Scale");
   }
   IJ.showProgress(1.0);
 }
 void drawAllROIs(Graphics g) {
   RoiManager rm = RoiManager.getInstance();
   if (rm == null) {
     rm = Interpreter.getBatchModeRoiManager();
     if (rm != null && rm.getList().getItemCount() == 0) rm = null;
   }
   if (rm == null) {
     // if (showAllList!=null)
     //	overlay = showAllList;
     showAllROIs = false;
     repaint();
     return;
   }
   initGraphics(g, null, showAllColor);
   Hashtable rois = rm.getROIs();
   java.awt.List list = rm.getList();
   boolean drawLabels = rm.getDrawLabels();
   currentRoi = null;
   int n = list.getItemCount();
   if (IJ.debugMode) IJ.log("paint: drawing " + n + " \"Show All\" ROIs");
   if (labelRects == null || labelRects.length != n) labelRects = new Rectangle[n];
   if (!drawLabels) showAllList = new Overlay();
   else showAllList = null;
   if (imp == null) return;
   int currentImage = imp.getCurrentSlice();
   int channel = 0, slice = 0, frame = 0;
   boolean hyperstack = imp.isHyperStack();
   if (hyperstack) {
     channel = imp.getChannel();
     slice = imp.getSlice();
     frame = imp.getFrame();
   }
   drawNames = Prefs.useNamesAsLabels;
   for (int i = 0; i < n; i++) {
     String label = list.getItem(i);
     Roi roi = (Roi) rois.get(label);
     if (roi == null) continue;
     if (showAllList != null) showAllList.add(roi);
     if (i < 200 && drawLabels && roi == imp.getRoi()) currentRoi = roi;
     if (Prefs.showAllSliceOnly && imp.getStackSize() > 1) {
       if (hyperstack && roi.getPosition() == 0) {
         int c = roi.getCPosition();
         int z = roi.getZPosition();
         int t = roi.getTPosition();
         if ((c == 0 || c == channel) && (z == 0 || z == slice) && (t == 0 || t == frame))
           drawRoi(g, roi, drawLabels ? i : -1);
       } else {
         int position = roi.getPosition();
         if (position == 0) position = getSliceNumber(roi.getName());
         if (position == 0 || position == currentImage) drawRoi(g, roi, drawLabels ? i : -1);
       }
     } else drawRoi(g, roi, drawLabels ? i : -1);
   }
   ((Graphics2D) g).setStroke(Roi.onePixelWide);
   drawNames = false;
 }
 protected void handlePopupMenu(MouseEvent e) {
   if (disablePopupMenu) return;
   if (IJ.debugMode) IJ.log("show popup: " + (e.isPopupTrigger() ? "true" : "false"));
   int x = e.getX();
   int y = e.getY();
   Roi roi = imp.getRoi();
   if (roi != null
       && (roi.getType() == Roi.POLYGON
           || roi.getType() == Roi.POLYLINE
           || roi.getType() == Roi.ANGLE)
       && roi.getState() == roi.CONSTRUCTING) {
     roi.handleMouseUp(x, y); // simulate double-click to finalize
     roi.handleMouseUp(x, y); // polygon or polyline selection
     return;
   }
   PopupMenu popup = Menus.getPopupMenu();
   if (popup != null) {
     add(popup);
     if (IJ.isMacOSX()) IJ.wait(10);
     popup.show(this, x, y);
   }
 }
 public void paint(Graphics g) {
   Roi roi = imp.getRoi();
   if (roi != null || showAllROIs || overlay != null) {
     if (roi != null) roi.updatePaste();
     if (!IJ.isMacOSX() && imageWidth != 0) {
       paintDoubleBuffered(g);
       return;
     }
   }
   try {
     if (imageUpdated) {
       imageUpdated = false;
       imp.updateImage();
     }
     Java2.setBilinearInterpolation(g, Prefs.interpolateScaledImages);
     Image img = imp.getImage();
     if (img != null)
       g.drawImage(
           img,
           0,
           0,
           (int) (srcRect.width * magnification),
           (int) (srcRect.height * magnification),
           srcRect.x,
           srcRect.y,
           srcRect.x + srcRect.width,
           srcRect.y + srcRect.height,
           null);
     if (overlay != null) drawOverlay(g);
     if (showAllROIs) drawAllROIs(g);
     if (roi != null) drawRoi(roi, g);
     if (srcRect.width < imageWidth || srcRect.height < imageHeight) drawZoomIndicator(g);
     if (IJ.debugMode) showFrameRate(g);
   } catch (OutOfMemoryError e) {
     IJ.outOfMemory("Paint");
   }
 }
Exemple #13
0
 void drawRoi() {
   double xPxl = xRoi;
   double yPxl = yRoi;
   if (centered) {
     xPxl -= width / 2;
     yPxl -= height / 2;
   }
   double widthPxl = width;
   double heightPxl = height;
   Calibration cal = imp.getCalibration();
   if (scaledUnits && cal.scaled()) {
     xPxl /= cal.pixelWidth;
     yPxl /= cal.pixelHeight;
     widthPxl /= cal.pixelWidth;
     heightPxl /= cal.pixelHeight;
     prevPixelWidth = cal.pixelWidth;
   }
   Roi roi;
   if (oval) roi = new OvalRoi(xPxl, yPxl, widthPxl, heightPxl);
   else roi = new Roi(xPxl, yPxl, widthPxl, heightPxl);
   imp.setRoi(roi);
   prevRoi = roi.getBounds();
   // prevPixelWidth = cal.pixelWidth;
 }
 public void mouseReleased(MouseEvent e) {
   flags = e.getModifiers();
   flags &= ~InputEvent.BUTTON1_MASK; // make sure button 1 bit is not set
   flags &= ~InputEvent.BUTTON2_MASK; // make sure button 2 bit is not set
   flags &= ~InputEvent.BUTTON3_MASK; // make sure button 3 bit is not set
   Roi roi = imp.getRoi();
   if (roi != null) {
     Rectangle r = roi.getBounds();
     int type = roi.getType();
     if ((r.width == 0 || r.height == 0)
         && !(type == Roi.POLYGON || type == Roi.POLYLINE || type == Roi.ANGLE || type == Roi.LINE)
         && !(roi instanceof TextRoi)
         && roi.getState() == roi.CONSTRUCTING
         && type != roi.POINT) imp.killRoi();
     else {
       roi.handleMouseUp(e.getX(), e.getY());
       if (roi.getType() == Roi.LINE && roi.getLength() == 0.0) imp.killRoi();
     }
   }
 }
 void drawOverlay(Graphics g) {
   if (imp != null && imp.getHideOverlay()) return;
   Color labelColor = overlay.getLabelColor();
   if (labelColor == null) labelColor = Color.white;
   initGraphics(g, labelColor, Roi.getColor());
   int n = overlay.size();
   if (IJ.debugMode) IJ.log("paint: drawing " + n + " ROI display list");
   int currentImage = imp != null ? imp.getCurrentSlice() : -1;
   if (imp.getStackSize() == 1) currentImage = -1;
   int channel = 0, slice = 0, frame = 0;
   boolean hyperstack = imp.isHyperStack();
   if (hyperstack) {
     channel = imp.getChannel();
     slice = imp.getSlice();
     frame = imp.getFrame();
   }
   drawNames = overlay.getDrawNames();
   boolean drawLabels = drawNames || overlay.getDrawLabels();
   for (int i = 0; i < n; i++) {
     if (overlay == null) break;
     Roi roi = overlay.get(i);
     if (hyperstack && roi.getPosition() == 0) {
       int c = roi.getCPosition();
       int z = roi.getZPosition();
       int t = roi.getTPosition();
       if ((c == 0 || c == channel) && (z == 0 || z == slice) && (t == 0 || t == frame))
         drawRoi(g, roi, drawLabels ? i + LIST_OFFSET : -1);
     } else {
       int position = roi.getPosition();
       if (position == 0 || position == currentImage)
         drawRoi(g, roi, drawLabels ? i + LIST_OFFSET : -1);
     }
   }
   ((Graphics2D) g).setStroke(Roi.onePixelWide);
   drawNames = false;
 }
Exemple #16
0
 public void run(String arg) {
   imp = IJ.getImage();
   if (imp == null) return;
   stackSize = imp.getStackSize();
   Roi roi = imp.getRoi();
   Calibration cal = imp.getCalibration();
   if (roi != null && roi.getBounds().equals(prevRoi) && cal.pixelWidth == prevPixelWidth)
     roi = null;
   if (roi != null) {
     boolean rectOrOval =
         roi != null && (roi.getType() == Roi.RECTANGLE || roi.getType() == Roi.OVAL);
     oval = rectOrOval && (roi.getType() == Roi.OVAL); // Handle existing oval ROI
     Rectangle r = roi.getBounds();
     width = r.width;
     height = r.height;
     xRoi = r.x;
     yRoi = r.y;
     if (scaledUnits && cal.scaled()) {
       xRoi = xRoi * cal.pixelWidth;
       yRoi = yRoi * cal.pixelHeight;
       width = width * cal.pixelWidth;
       height = height * cal.pixelHeight;
     }
     if (centered) { // Make xRoi and yRoi consistent when centered mode is active
       xRoi += width / 2.0;
       yRoi += height / 2.0;
     }
   } else if (!validDialogValues()) {
     width = imp.getWidth() / 2;
     height = imp.getHeight() / 2;
     xRoi = width / 2;
     yRoi = height / 2;
   }
   iSlice = imp.getCurrentSlice();
   showDialog();
 }
Exemple #17
0
  String getInfo(ImagePlus imp, ImageProcessor ip) {
    String s = new String("\n");
    s += "Title: " + imp.getTitle() + "\n";
    Calibration cal = imp.getCalibration();
    int stackSize = imp.getStackSize();
    int channels = imp.getNChannels();
    int slices = imp.getNSlices();
    int frames = imp.getNFrames();
    int digits = imp.getBitDepth() == 32 ? 4 : 0;
    if (cal.scaled()) {
      String unit = cal.getUnit();
      String units = cal.getUnits();
      s +=
          "Width:  "
              + IJ.d2s(imp.getWidth() * cal.pixelWidth, 2)
              + " "
              + units
              + " ("
              + imp.getWidth()
              + ")\n";
      s +=
          "Height:  "
              + IJ.d2s(imp.getHeight() * cal.pixelHeight, 2)
              + " "
              + units
              + " ("
              + imp.getHeight()
              + ")\n";
      if (slices > 1)
        s += "Depth:  " + IJ.d2s(slices * cal.pixelDepth, 2) + " " + units + " (" + slices + ")\n";
      double xResolution = 1.0 / cal.pixelWidth;
      double yResolution = 1.0 / cal.pixelHeight;
      int places = Tools.getDecimalPlaces(xResolution, yResolution);
      if (xResolution == yResolution)
        s += "Resolution:  " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
      else {
        s += "X Resolution:  " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
        s += "Y Resolution:  " + IJ.d2s(yResolution, places) + " pixels per " + unit + "\n";
      }
    } else {
      s += "Width:  " + imp.getWidth() + " pixels\n";
      s += "Height:  " + imp.getHeight() + " pixels\n";
      if (stackSize > 1) s += "Depth:  " + slices + " pixels\n";
    }
    if (stackSize > 1)
      s +=
          "Voxel size: "
              + d2s(cal.pixelWidth)
              + "x"
              + d2s(cal.pixelHeight)
              + "x"
              + d2s(cal.pixelDepth)
              + " "
              + cal.getUnit()
              + "\n";
    else
      s +=
          "Pixel size: "
              + d2s(cal.pixelWidth)
              + "x"
              + d2s(cal.pixelHeight)
              + " "
              + cal.getUnit()
              + "\n";

    s += "ID: " + imp.getID() + "\n";
    String zOrigin = stackSize > 1 || cal.zOrigin != 0.0 ? "," + d2s(cal.zOrigin) : "";
    s += "Coordinate origin:  " + d2s(cal.xOrigin) + "," + d2s(cal.yOrigin) + zOrigin + "\n";
    int type = imp.getType();
    switch (type) {
      case ImagePlus.GRAY8:
        s += "Bits per pixel: 8 ";
        String lut = "LUT";
        if (imp.getProcessor().isColorLut()) lut = "color " + lut;
        else lut = "grayscale " + lut;
        if (imp.isInvertedLut()) lut = "inverting " + lut;
        s += "(" + lut + ")\n";
        if (imp.getNChannels() > 1) s += displayRanges(imp);
        else s += "Display range: " + (int) ip.getMin() + "-" + (int) ip.getMax() + "\n";
        break;
      case ImagePlus.GRAY16:
      case ImagePlus.GRAY32:
        if (type == ImagePlus.GRAY16) {
          String sign = cal.isSigned16Bit() ? "signed" : "unsigned";
          s += "Bits per pixel: 16 (" + sign + ")\n";
        } else s += "Bits per pixel: 32 (float)\n";
        if (imp.getNChannels() > 1) s += displayRanges(imp);
        else {
          s += "Display range: ";
          double min = ip.getMin();
          double max = ip.getMax();
          if (cal.calibrated()) {
            min = cal.getCValue((int) min);
            max = cal.getCValue((int) max);
          }
          s += IJ.d2s(min, digits) + " - " + IJ.d2s(max, digits) + "\n";
        }
        break;
      case ImagePlus.COLOR_256:
        s += "Bits per pixel: 8 (color LUT)\n";
        break;
      case ImagePlus.COLOR_RGB:
        s += "Bits per pixel: 32 (RGB)\n";
        break;
    }
    double interval = cal.frameInterval;
    double fps = cal.fps;
    if (stackSize > 1) {
      ImageStack stack = imp.getStack();
      int slice = imp.getCurrentSlice();
      String number = slice + "/" + stackSize;
      String label = stack.getShortSliceLabel(slice);
      if (label != null && label.length() > 0) label = " (" + label + ")";
      else label = "";
      if (interval > 0.0 || fps != 0.0) {
        s += "Frame: " + number + label + "\n";
        if (fps != 0.0) {
          String sRate =
              Math.abs(fps - Math.round(fps)) < 0.00001 ? IJ.d2s(fps, 0) : IJ.d2s(fps, 5);
          s += "Frame rate: " + sRate + " fps\n";
        }
        if (interval != 0.0)
          s +=
              "Frame interval: "
                  + ((int) interval == interval ? IJ.d2s(interval, 0) : IJ.d2s(interval, 5))
                  + " "
                  + cal.getTimeUnit()
                  + "\n";
      } else s += "Image: " + number + label + "\n";
      if (imp.isHyperStack()) {
        if (channels > 1) s += "  Channel: " + imp.getChannel() + "/" + channels + "\n";
        if (slices > 1) s += "  Slice: " + imp.getSlice() + "/" + slices + "\n";
        if (frames > 1) s += "  Frame: " + imp.getFrame() + "/" + frames + "\n";
      }
      if (imp.isComposite()) {
        if (!imp.isHyperStack() && channels > 1) s += "  Channels: " + channels + "\n";
        String mode = ((CompositeImage) imp).getModeAsString();
        s += "  Composite mode: \"" + mode + "\"\n";
      }
    }

    if (ip.getMinThreshold() == ImageProcessor.NO_THRESHOLD) s += "No Threshold\n";
    else {
      double lower = ip.getMinThreshold();
      double upper = ip.getMaxThreshold();
      int dp = digits;
      if (cal.calibrated()) {
        lower = cal.getCValue((int) lower);
        upper = cal.getCValue((int) upper);
        dp = cal.isSigned16Bit() ? 0 : 4;
      }
      s += "Threshold: " + IJ.d2s(lower, dp) + "-" + IJ.d2s(upper, dp) + "\n";
    }
    ImageCanvas ic = imp.getCanvas();
    double mag = ic != null ? ic.getMagnification() : 1.0;
    if (mag != 1.0) s += "Magnification: " + IJ.d2s(mag, 2) + "\n";

    if (cal.calibrated()) {
      s += " \n";
      int curveFit = cal.getFunction();
      s += "Calibration Function: ";
      if (curveFit == Calibration.UNCALIBRATED_OD) s += "Uncalibrated OD\n";
      else if (curveFit == Calibration.CUSTOM) s += "Custom lookup table\n";
      else s += CurveFitter.fList[curveFit] + "\n";
      double[] c = cal.getCoefficients();
      if (c != null) {
        s += "  a: " + IJ.d2s(c[0], 6) + "\n";
        s += "  b: " + IJ.d2s(c[1], 6) + "\n";
        if (c.length >= 3) s += "  c: " + IJ.d2s(c[2], 6) + "\n";
        if (c.length >= 4) s += "  c: " + IJ.d2s(c[3], 6) + "\n";
        if (c.length >= 5) s += "  c: " + IJ.d2s(c[4], 6) + "\n";
      }
      s += "  Unit: \"" + cal.getValueUnit() + "\"\n";
    } else s += "Uncalibrated\n";

    FileInfo fi = imp.getOriginalFileInfo();
    if (fi != null) {
      if (fi.url != null && !fi.url.equals("")) s += "URL: " + fi.url + "\n";
      else if (fi.directory != null && fi.fileName != null)
        s += "Path: " + fi.directory + fi.fileName + "\n";
    }

    ImageWindow win = imp.getWindow();
    if (win != null) {
      Point loc = win.getLocation();
      Dimension screen = IJ.getScreenSize();
      s +=
          "Screen location: "
              + loc.x
              + ","
              + loc.y
              + " ("
              + screen.width
              + "x"
              + screen.height
              + ")\n";
    }

    Overlay overlay = imp.getOverlay();
    if (overlay != null) {
      String hidden = imp.getHideOverlay() ? " (hidden)" : " ";
      int n = overlay.size();
      String elements = n == 1 ? " element" : " elements";
      s += "Overlay: " + n + elements + (imp.getHideOverlay() ? " (hidden)" : "") + "\n";
    } else s += "No Overlay\n";

    Roi roi = imp.getRoi();
    if (roi == null) {
      if (cal.calibrated()) s += " \n";
      s += "No Selection\n";
    } else if (roi instanceof EllipseRoi) {
      s += "\nElliptical Selection\n";
      double[] p = ((EllipseRoi) roi).getParams();
      double dx = p[2] - p[0];
      double dy = p[3] - p[1];
      double major = Math.sqrt(dx * dx + dy * dy);
      s += "  Major: " + IJ.d2s(major, 2) + "\n";
      s += "  Minor: " + IJ.d2s(major * p[4], 2) + "\n";
      s += "  X1: " + IJ.d2s(p[0], 2) + "\n";
      s += "  Y1: " + IJ.d2s(p[1], 2) + "\n";
      s += "  X2: " + IJ.d2s(p[2], 2) + "\n";
      s += "  Y2: " + IJ.d2s(p[3], 2) + "\n";
      s += "  Aspect ratio: " + IJ.d2s(p[4], 2) + "\n";
    } else {
      s += " \n";
      s += roi.getTypeAsString() + " Selection";
      String points = null;
      if (roi instanceof PointRoi) {
        int npoints = ((PolygonRoi) roi).getNCoordinates();
        String suffix = npoints > 1 ? "s)" : ")";
        points = " (" + npoints + " point" + suffix;
      }
      String name = roi.getName();
      if (name != null) {
        s += " (\"" + name + "\")";
        if (points != null) s += "\n " + points;
      } else if (points != null) s += points;
      s += "\n";
      Rectangle r = roi.getBounds();
      if (roi instanceof Line) {
        Line line = (Line) roi;
        s += "  X1: " + IJ.d2s(line.x1d * cal.pixelWidth) + "\n";
        s += "  Y1: " + IJ.d2s(yy(line.y1d, imp) * cal.pixelHeight) + "\n";
        s += "  X2: " + IJ.d2s(line.x2d * cal.pixelWidth) + "\n";
        s += "  Y2: " + IJ.d2s(yy(line.y2d, imp) * cal.pixelHeight) + "\n";
      } else if (cal.scaled()) {
        s += "  X: " + IJ.d2s(cal.getX(r.x)) + " (" + r.x + ")\n";
        s += "  Y: " + IJ.d2s(cal.getY(r.y, imp.getHeight())) + " (" + r.y + ")\n";
        s += "  Width: " + IJ.d2s(r.width * cal.pixelWidth) + " (" + r.width + ")\n";
        s += "  Height: " + IJ.d2s(r.height * cal.pixelHeight) + " (" + r.height + ")\n";
      } else {
        s += "  X: " + r.x + "\n";
        s += "  Y: " + yy(r.y, imp) + "\n";
        s += "  Width: " + r.width + "\n";
        s += "  Height: " + r.height + "\n";
      }
    }

    return s;
  }
Exemple #18
0
  public void keyPressed(KeyEvent e) {
    // if (e.isConsumed()) return;
    int keyCode = e.getKeyCode();
    IJ.setKeyDown(keyCode);
    hotkey = false;
    if (keyCode == KeyEvent.VK_CONTROL || keyCode == KeyEvent.VK_SHIFT) return;
    char keyChar = e.getKeyChar();
    int flags = e.getModifiers();
    if (IJ.debugMode)
      IJ.log(
          "keyPressed: code="
              + keyCode
              + " ("
              + KeyEvent.getKeyText(keyCode)
              + "), char=\""
              + keyChar
              + "\" ("
              + (int) keyChar
              + "), flags="
              + KeyEvent.getKeyModifiersText(flags));
    boolean shift = (flags & KeyEvent.SHIFT_MASK) != 0;
    boolean control = (flags & KeyEvent.CTRL_MASK) != 0;
    boolean alt = (flags & KeyEvent.ALT_MASK) != 0;
    boolean meta = (flags & KeyEvent.META_MASK) != 0;
    String cmd = null;
    ImagePlus imp = WindowManager.getCurrentImage();
    boolean isStack = (imp != null) && (imp.getStackSize() > 1);

    if (imp != null
        && !control
        && ((keyChar >= 32 && keyChar <= 255) || keyChar == '\b' || keyChar == '\n')) {
      Roi roi = imp.getRoi();
      if (roi instanceof TextRoi) {
        if ((flags & KeyEvent.META_MASK) != 0 && IJ.isMacOSX()) return;
        if (alt) {
          switch (keyChar) {
            case 'u':
            case 'm':
              keyChar = IJ.micronSymbol;
              break;
            case 'A':
              keyChar = IJ.angstromSymbol;
              break;
            default:
          }
        }
        ((TextRoi) roi).addChar(keyChar);
        return;
      }
    }

    // Handle one character macro shortcuts
    if (!control && !meta) {
      Hashtable macroShortcuts = Menus.getMacroShortcuts();
      if (macroShortcuts.size() > 0) {
        if (shift) cmd = (String) macroShortcuts.get(new Integer(keyCode + 200));
        else cmd = (String) macroShortcuts.get(new Integer(keyCode));
        if (cmd != null) {
          // MacroInstaller.runMacroCommand(cmd);
          commandName = cmd;
          MacroInstaller.runMacroShortcut(cmd);
          return;
        }
      }
    }

    if ((!Prefs.requireControlKey || control || meta) && keyChar != '+') {
      Hashtable shortcuts = Menus.getShortcuts();
      if (shift) cmd = (String) shortcuts.get(new Integer(keyCode + 200));
      else cmd = (String) shortcuts.get(new Integer(keyCode));
    }

    if (cmd == null) {
      switch (keyChar) {
        case '<':
        case ',':
          if (isStack) cmd = "Previous Slice [<]";
          break;
        case '>':
        case '.':
        case ';':
          if (isStack) cmd = "Next Slice [>]";
          break;
        case '+':
        case '=':
          cmd = "In [+]";
          break;
        case '-':
          cmd = "Out [-]";
          break;
        case '/':
          cmd = "Reslice [/]...";
          break;
        default:
      }
    }

    if (cmd == null) {
      switch (keyCode) {
        case KeyEvent.VK_TAB:
          WindowManager.putBehind();
          return;
        case KeyEvent.VK_BACK_SPACE: // delete
          if (deleteOverlayRoi(imp)) return;
          cmd = "Clear";
          hotkey = true;
          break;
          // case KeyEvent.VK_BACK_SLASH: cmd=IJ.altKeyDown()?"Animation Options...":"Start
          // Animation"; break;
        case KeyEvent.VK_EQUALS:
          cmd = "In [+]";
          break;
        case KeyEvent.VK_MINUS:
          cmd = "Out [-]";
          break;
        case KeyEvent.VK_SLASH:
        case 0xbf:
          cmd = "Reslice [/]...";
          break;
        case KeyEvent.VK_COMMA:
        case 0xbc:
          if (isStack) cmd = "Previous Slice [<]";
          break;
        case KeyEvent.VK_PERIOD:
        case 0xbe:
          if (isStack) cmd = "Next Slice [>]";
          break;
        case KeyEvent.VK_LEFT:
        case KeyEvent.VK_RIGHT:
        case KeyEvent.VK_UP:
        case KeyEvent.VK_DOWN: // arrow keys
          if (imp == null) return;
          Roi roi = imp.getRoi();
          if (IJ.shiftKeyDown() && imp == Orthogonal_Views.getImage()) return;
          boolean stackKey = imp.getStackSize() > 1 && (roi == null || IJ.shiftKeyDown());
          boolean zoomKey = roi == null || IJ.shiftKeyDown() || IJ.controlKeyDown();
          if (stackKey && keyCode == KeyEvent.VK_RIGHT) cmd = "Next Slice [>]";
          else if (stackKey && keyCode == KeyEvent.VK_LEFT) cmd = "Previous Slice [<]";
          else if (zoomKey
              && keyCode == KeyEvent.VK_DOWN
              && !ignoreArrowKeys(imp)
              && Toolbar.getToolId() < Toolbar.SPARE6) cmd = "Out [-]";
          else if (zoomKey
              && keyCode == KeyEvent.VK_UP
              && !ignoreArrowKeys(imp)
              && Toolbar.getToolId() < Toolbar.SPARE6) cmd = "In [+]";
          else if (roi != null) {
            if ((flags & KeyEvent.ALT_MASK) != 0) roi.nudgeCorner(keyCode);
            else roi.nudge(keyCode);
            return;
          }
          break;
        case KeyEvent.VK_ESCAPE:
          abortPluginOrMacro(imp);
          return;
        case KeyEvent.VK_ENTER:
          WindowManager.toFront(this);
          return;
        default:
          break;
      }
    }

    if (cmd != null && !cmd.equals("")) {
      commandName = cmd;
      if (cmd.equals("Fill") || cmd.equals("Draw")) hotkey = true;
      if (cmd.charAt(0) == MacroInstaller.commandPrefix) MacroInstaller.runMacroShortcut(cmd);
      else {
        doCommand(cmd);
        keyPressedTime = System.currentTimeMillis();
        lastKeyCommand = cmd;
      }
    }
  }
 /** @deprecated replaced by ImagePlus.setOverlay(Roi, Color, int, Color) */
 public void setDisplayList(Roi roi, Color color) {
   roi.setStrokeColor(color);
   Overlay list = new Overlay();
   list.add(roi);
   setOverlay(list);
 }
  public void mousePressed(MouseEvent e) {
    // if (ij==null) return;
    showCursorStatus = true;
    int toolID = Toolbar.getToolId();
    ImageWindow win = imp.getWindow();
    if (win != null && win.running2 && toolID != Toolbar.MAGNIFIER) {
      if (win instanceof StackWindow) ((StackWindow) win).setAnimate(false);
      else win.running2 = false;
      return;
    }

    int x = e.getX();
    int y = e.getY();
    flags = e.getModifiers();
    // IJ.log("Mouse pressed: " + e.isPopupTrigger() + "  " + ij.modifiers(flags));
    // if (toolID!=Toolbar.MAGNIFIER && e.isPopupTrigger()) {
    if (toolID != Toolbar.MAGNIFIER
        && (e.isPopupTrigger() || (!IJ.isMacintosh() && (flags & Event.META_MASK) != 0))) {
      handlePopupMenu(e);
      return;
    }

    int ox = offScreenX(x);
    int oy = offScreenY(y);
    xMouse = ox;
    yMouse = oy;
    if (IJ.spaceBarDown()) {
      // temporarily switch to "hand" tool of space bar down
      setupScroll(ox, oy);
      return;
    }
    if (showAllROIs) {
      Roi roi = imp.getRoi();
      if (!(roi != null && (roi.contains(ox, oy) || roi.isHandle(x, y) >= 0))
          && roiManagerSelect(x, y)) return;
    }
    if (customRoi && overlay != null) return;

    switch (toolID) {
      case Toolbar.MAGNIFIER:
        if (IJ.shiftKeyDown()) zoomToSelection(ox, oy);
        else if ((flags & (Event.ALT_MASK | Event.META_MASK | Event.CTRL_MASK)) != 0) {
          // IJ.run("Out");
          zoomOut(x, y);
          if (getMagnification() < 1.0) imp.repaintWindow();
        } else {
          // IJ.run("In");
          zoomIn(x, y);
          if (getMagnification() <= 1.0) imp.repaintWindow();
        }
        break;
      case Toolbar.HAND:
        setupScroll(ox, oy);
        break;
      case Toolbar.DROPPER:
        setDrawingColor(ox, oy, IJ.altKeyDown());
        break;
      case Toolbar.WAND:
        Roi roi = imp.getRoi();
        if (roi != null && roi.contains(ox, oy)) {
          Rectangle r = roi.getBounds();
          if (r.width == imageWidth && r.height == imageHeight) imp.killRoi();
          else if (!e.isAltDown()) {
            handleRoiMouseDown(e);
            return;
          }
        }
        if (roi != null) {
          int handle = roi.isHandle(x, y);
          if (handle >= 0) {
            roi.mouseDownInHandle(handle, x, y);
            return;
          }
        }
        setRoiModState(e, roi, -1);
        String mode = WandToolOptions.getMode();
        double tolerance = WandToolOptions.getTolerance();
        int npoints = IJ.doWand(ox, oy, tolerance, mode);
        if (Recorder.record && npoints > 0) {
          if (tolerance == 0.0 && mode.equals("Legacy")) Recorder.record("doWand", ox, oy);
          else
            Recorder.recordString(
                "doWand(" + ox + ", " + oy + ", " + tolerance + ", \"" + mode + "\");\n");
        }
        break;
      case Toolbar.OVAL:
        if (Toolbar.getBrushSize() > 0) new RoiBrush();
        else handleRoiMouseDown(e);
        break;
      case Toolbar.SPARE1:
      case Toolbar.SPARE2:
      case Toolbar.SPARE3:
      case Toolbar.SPARE4:
      case Toolbar.SPARE5:
      case Toolbar.SPARE6:
      case Toolbar.SPARE7:
      case Toolbar.SPARE8:
      case Toolbar.SPARE9:
        Toolbar.getInstance().runMacroTool(toolID);
        break;
      default: // selection tool
        handleRoiMouseDown(e);
    }
  }
 private void drawRoi(Roi roi, Graphics g) {
   if (roi == currentRoi) {
     Color lineColor = roi.getStrokeColor();
     Color fillColor = roi.getFillColor();
     float lineWidth = roi.getStrokeWidth();
     roi.setStrokeColor(null);
     roi.setFillColor(null);
     boolean strokeSet = roi.getStroke() != null;
     if (strokeSet) roi.setStrokeWidth(1);
     roi.draw(g);
     roi.setStrokeColor(lineColor);
     if (strokeSet) roi.setStrokeWidth(lineWidth);
     roi.setFillColor(fillColor);
     currentRoi = null;
   } else roi.draw(g);
 }