public void update(String userId, Entry entry) {
if (entry == null) {
return;
}
authorization.expectWrite(userId, entry);
boolean scheduleRebuild = sequenceDAO.hasSequence(entry.getId());
entry.setModificationTime(Calendar.getInstance().getTime());
if (entry.getVisibility() == null) entry.setVisibility(Visibility.OK.getValue());
entry = dao.update(entry);
// check pi email
String piEmail = entry.getPrincipalInvestigatorEmail();
if (StringUtils.isNotEmpty(piEmail)) {
Account pi = DAOFactory.getAccountDAO().getByEmail(piEmail);
if (pi != null) {
// add write permission for the PI (method also checks to see if permission already exists)
AccessPermission accessPermission = new AccessPermission();
accessPermission.setArticle(AccessPermission.Article.ACCOUNT);
accessPermission.setArticleId(pi.getId());
accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
accessPermission.setTypeId(entry.getId());
permissionsController.addPermission(userId, accessPermission);
}
}
if (scheduleRebuild) {
ApplicationController.scheduleBlastIndexRebuildTask(true);
}
}
public long updatePart(String userId, long partId, PartData part) {
Entry existing = dao.get(partId);
authorization.expectWrite(userId, existing);
Entry entry = InfoToModelFactory.updateEntryField(part, existing);
entry.getLinkedEntries().clear();
if (part.getLinkedParts() != null && part.getLinkedParts().size() > 0) {
for (PartData data : part.getLinkedParts()) {
Entry linked = dao.getByPartNumber(data.getPartId());
// check permissions on link
if (!authorization.canRead(userId, linked)) {
continue;
}
if (!canLink(entry, linked)) continue;
entry.getLinkedEntries().add(linked);
}
}
entry.setModificationTime(Calendar.getInstance().getTime());
if (entry.getVisibility() == Visibility.DRAFT.getValue()) {
List<EntryField> invalidFields = EntryUtil.validates(part);
if (invalidFields.isEmpty()) entry.setVisibility(Visibility.OK.getValue());
}
entry = dao.update(entry);
// check pi email
String piEmail = entry.getPrincipalInvestigatorEmail();
if (StringUtils.isNotEmpty(piEmail)) {
Account pi = DAOFactory.getAccountDAO().getByEmail(piEmail);
if (pi != null) {
// add write permission for the PI (method also checks to see if permission already exists)
AccessPermission accessPermission = new AccessPermission();
accessPermission.setArticle(AccessPermission.Article.ACCOUNT);
accessPermission.setArticleId(pi.getId());
accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
accessPermission.setTypeId(entry.getId());
permissionsController.addPermission(userId, accessPermission);
}
}
return entry.getId();
}
/**
* Moves the specified list of entries to the deleted folder
*
* @param userId unique identifier for user making the request. Must have write access privileges
* on the entries in the list
* @param list unique identifiers for entries
* @return true or false if operation succeeds on all listed entries or not
*/
public boolean moveEntriesToTrash(String userId, ArrayList<PartData> list) {
List<Entry> toTrash = new LinkedList<>();
for (PartData data : list) {
Entry entry = dao.get(data.getId());
if (entry == null || !authorization.canWriteThoroughCheck(userId, entry)) return false;
toTrash.add(entry);
}
// add to bin
try {
for (Entry entry : toTrash) {
entry.setVisibility(Visibility.DELETED.getValue());
dao.update(entry);
}
} catch (DAOException de) {
Logger.error(de);
return false;
}
return true;
}