Exemple #1
0
  public void update(String userId, Entry entry) {
    if (entry == null) {
      return;
    }

    authorization.expectWrite(userId, entry);
    boolean scheduleRebuild = sequenceDAO.hasSequence(entry.getId());

    entry.setModificationTime(Calendar.getInstance().getTime());
    if (entry.getVisibility() == null) entry.setVisibility(Visibility.OK.getValue());
    entry = dao.update(entry);

    // check pi email
    String piEmail = entry.getPrincipalInvestigatorEmail();
    if (StringUtils.isNotEmpty(piEmail)) {
      Account pi = DAOFactory.getAccountDAO().getByEmail(piEmail);
      if (pi != null) {
        // add write permission for the PI (method also checks to see if permission already exists)
        AccessPermission accessPermission = new AccessPermission();
        accessPermission.setArticle(AccessPermission.Article.ACCOUNT);
        accessPermission.setArticleId(pi.getId());
        accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
        accessPermission.setTypeId(entry.getId());
        permissionsController.addPermission(userId, accessPermission);
      }
    }

    if (scheduleRebuild) {
      ApplicationController.scheduleBlastIndexRebuildTask(true);
    }
  }
Exemple #2
0
  public long updatePart(String userId, long partId, PartData part) {
    Entry existing = dao.get(partId);
    authorization.expectWrite(userId, existing);

    Entry entry = InfoToModelFactory.updateEntryField(part, existing);
    entry.getLinkedEntries().clear();
    if (part.getLinkedParts() != null && part.getLinkedParts().size() > 0) {
      for (PartData data : part.getLinkedParts()) {
        Entry linked = dao.getByPartNumber(data.getPartId());

        // check permissions on link
        if (!authorization.canRead(userId, linked)) {
          continue;
        }

        if (!canLink(entry, linked)) continue;

        entry.getLinkedEntries().add(linked);
      }
    }

    entry.setModificationTime(Calendar.getInstance().getTime());
    if (entry.getVisibility() == Visibility.DRAFT.getValue()) {
      List<EntryField> invalidFields = EntryUtil.validates(part);
      if (invalidFields.isEmpty()) entry.setVisibility(Visibility.OK.getValue());
    }
    entry = dao.update(entry);

    // check pi email
    String piEmail = entry.getPrincipalInvestigatorEmail();
    if (StringUtils.isNotEmpty(piEmail)) {
      Account pi = DAOFactory.getAccountDAO().getByEmail(piEmail);
      if (pi != null) {
        // add write permission for the PI (method also checks to see if permission already exists)
        AccessPermission accessPermission = new AccessPermission();
        accessPermission.setArticle(AccessPermission.Article.ACCOUNT);
        accessPermission.setArticleId(pi.getId());
        accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
        accessPermission.setTypeId(entry.getId());
        permissionsController.addPermission(userId, accessPermission);
      }
    }

    return entry.getId();
  }
Exemple #3
0
  /**
   * Moves the specified list of entries to the deleted folder
   *
   * @param userId unique identifier for user making the request. Must have write access privileges
   *     on the entries in the list
   * @param list unique identifiers for entries
   * @return true or false if operation succeeds on all listed entries or not
   */
  public boolean moveEntriesToTrash(String userId, ArrayList<PartData> list) {
    List<Entry> toTrash = new LinkedList<>();
    for (PartData data : list) {
      Entry entry = dao.get(data.getId());
      if (entry == null || !authorization.canWriteThoroughCheck(userId, entry)) return false;

      toTrash.add(entry);
    }

    // add to bin
    try {
      for (Entry entry : toTrash) {
        entry.setVisibility(Visibility.DELETED.getValue());
        dao.update(entry);
      }
    } catch (DAOException de) {
      Logger.error(de);
      return false;
    }

    return true;
  }