@Test(dataProvider = "assemblyResults")
public void testAddManyHaplotypes(
final java.util.List<AssemblyResult> assemblyResults,
final java.util.List<java.util.List<Haplotype>> haplotypes) {
final AssemblyResultSet subject = new AssemblyResultSet();
for (int i = 0; i < haplotypes.size(); i++) {
final int haplotypeCountBefore = subject.getHaplotypeCount();
final java.util.List<Haplotype> haplos = haplotypes.get(i);
final AssemblyResult ar = assemblyResults.get(i);
for (final Haplotype h : haplos) {
Assert.assertTrue(subject.add(h, ar));
Assert.assertFalse(subject.add(h, ar));
if (h.isReference()) Assert.assertEquals(subject.getReferenceHaplotype(), h);
}
final int haplotypeCountAfter = subject.getHaplotypeCount();
Assert.assertEquals(haplos.size(), haplotypeCountAfter - haplotypeCountBefore);
Assert.assertTrue(subject.getMaximumKmerSize() >= ar.getKmerSize());
Assert.assertTrue(subject.getMinimumKmerSize() <= ar.getKmerSize());
Assert.assertEquals(
subject.getUniqueReadThreadingGraph(ar.getKmerSize()), ar.getThreadingGraph());
}
}
