/**
* Loop through the ZIP file, copying its entries into a new, temporary ZIP file, skipping the
* entry to be deleted. Then replace the original file with the new one.
*/
protected Integer deleteEntry() throws XMLDataStoreException {
try {
ZipInputStream inStream = this.buildZipInputStream();
File outFile = this.buildTempFile();
ZipOutputStream outStream = new ZipOutputStream(new FileOutputStream(outFile));
byte[] buffer = new byte[32768];
int inCount = 0;
int outCount = 0;
// copy all the entries except the one to be deleted
ZipEntry entry = inStream.getNextEntry();
while (entry != null) {
inCount++;
if (!this.getZipEntryName().equals(entry.getName())) {
outCount++;
outStream.putNextEntry(entry);
int byteCount;
while ((byteCount = inStream.read(buffer)) != -1) {
outStream.write(buffer, 0, byteCount);
}
outStream.closeEntry();
}
entry = inStream.getNextEntry();
}
inStream.close();
if (outCount == 0) {
// add a dummy record to an empty file so we can close it
// this is required by ZipOutputStream
outStream.putNextEntry(new ZipEntry("delete.txt"));
outStream.write(
"This file is a place-holder. The containing ZIP file should be deleted.".getBytes());
outStream.closeEntry();
}
outStream.close();
if (outCount == inCount) {
// no entries were removed - just delete the temp file
outFile.delete();
} else {
// at least one entry removed - delete the original file
this.getFile().delete();
if (outCount == 0) {
// NO entries remain - just delete the temp file too
outFile.delete();
} else {
// entries remain - replace original file with temp file
outFile.renameTo(this.getFile());
}
}
return new Integer(inCount - outCount); // should be 0 or 1
} catch (IOException ex) {
throw XMLDataStoreException.ioException(ex);
}
}
/**
* Rename the ZIP file to a temporary file, then copy its entries back into the original ZIP file,
* leaving the stream open and returning it.
*/
protected Writer buildWriteStream(boolean entryShouldExist) throws XMLDataStoreException {
try {
File inFile = this.buildTempFile();
inFile.delete(); // the file actually gets created - delete it
boolean renameSucceeded = this.getFile().renameTo(inFile);
ZipInputStream inStream = this.buildZipInputStream(inFile);
ZipOutputStream outStream = this.buildZipOutputStream();
boolean entryActuallyExists = false;
byte[] buffer = new byte[32768];
ZipEntry entry = inStream.getNextEntry();
while (entry != null) {
boolean weWantToWriteTheEntry = true;
if (this.getZipEntryName().equals(entry.getName())) {
entryActuallyExists = true;
// if we were expecting the entry, skip it;
// if we were NOT expecting the entry, allow it to be rewritten
// so the file is restored to its original condition
if (entryShouldExist) {
weWantToWriteTheEntry = false;
}
}
if (weWantToWriteTheEntry) {
outStream.putNextEntry(entry);
int byteCount;
while ((byteCount = inStream.read(buffer)) != -1) {
outStream.write(buffer, 0, byteCount);
}
outStream.closeEntry();
}
entry = inStream.getNextEntry();
}
// close and delete the temporary file
inStream.close();
inFile.delete();
// check for invalid state
if (entryShouldExist != entryActuallyExists) {
outStream.close(); // close it since we will not be returning it
// need more helpful exceptions here
if (entryActuallyExists) {
throw XMLDataStoreException.fileAlreadyExists(new File(this.getZipEntryName()));
} else {
throw XMLDataStoreException.fileNotFound(new File(this.getZipEntryName()), null);
}
}
outStream.putNextEntry(new ZipEntry(this.getZipEntryName()));
return new OutputStreamWriter(outStream);
} catch (IOException ex) {
throw XMLDataStoreException.ioException(ex);
}
}
/**
* Takes an input File containing the pack file, and generates a JarOutputStream.
*
* <p>Does not close its output. (The output can accumulate more elements.)
*
* @param in a File.
* @param out a JarOutputStream.
* @exception IOException if an error is encountered.
*/
public void unpack(File in, JarOutputStream out) throws IOException {
// Use the stream-based implementation.
// %%% Reconsider if native unpacker learns to memory-map the file.
FileInputStream instr = new FileInputStream(in);
unpack(instr, out);
if (_props.getBoolean(Utils.UNPACK_REMOVE_PACKFILE)) {
in.delete();
}
}
public static void clearFolder(File folder) {
if (folder.exists()) {
for (File child : folder.listFiles()) {
if (child.isDirectory())
clearFolder(child);
if (!child.delete())
throw new RuntimeException("Cannot delete " + child);
}
}
}
private boolean deleteDirectory(File path) {
File[] files = path.listFiles();
for (int i = 0; i < files.length; i++) {
File f = files[i];
if (f.isFile()) {
if (!f.delete()) {
return false;
}
} else {
if (!deleteDirectory(f)) {
return false;
}
}
}
if (path.delete()) {
return true;
} else {
return false;
}
}
private void adjustConfiguration(Element root, File dir) {
// If this is an ISN installation and the Edge Server
// keystore and truststore files do not exist, then set the configuration
// to use the keystore.jks and truststore.jks files instead of the ones
// in the default installation. If the Edge Server files do exist, then
// delete the keystore.jks and truststore.jks files, just to avoid
// confusion.
if (programName.equals("ISN")) {
Element server = getFirstNamedChild(root, "Server");
Element ssl = getFirstNamedChild(server, "SSL");
String rsnaroot = System.getenv("RSNA_ROOT");
rsnaroot = (rsnaroot == null) ? "/usr/local/edgeserver" : rsnaroot.trim();
String keystore = rsnaroot + "/conf/keystore.jks";
String truststore = rsnaroot + "/conf/truststore.jks";
File keystoreFile = new File(keystore);
File truststoreFile = new File(truststore);
cp.appendln(Color.black, "Looking for " + keystore);
if (keystoreFile.exists() || truststoreFile.exists()) {
cp.appendln(Color.black, "...found it [This is an EdgeServer installation]");
// Delete the default files, just to avoid confusion
File ks = new File(dir, "keystore.jks");
File ts = new File(dir, "truststore.jks");
boolean ksok = ks.delete();
boolean tsok = ts.delete();
if (ksok && tsok) cp.appendln(Color.black, "...Unused default SSL files were removed");
else {
if (!ksok) cp.appendln(Color.black, "...Unable to delete " + ks);
if (!tsok) cp.appendln(Color.black, "...Unable to delete " + ts);
}
} else {
cp.appendln(Color.black, "...not found [OK, this is a non-EdgeServer installation]");
ssl.setAttribute("keystore", "keystore.jks");
ssl.setAttribute("keystorePassword", "edge1234");
ssl.setAttribute("truststore", "truststore.jks");
ssl.setAttribute("truststorePassword", "edge1234");
cp.appendln(
Color.black, "...SSL attributes were updated for a non-EdgeServer installation");
}
}
}
void removeFiles() throws IOException {
BufferedReader reader = new BufferedReader(new FileReader(new File(sGREDir, "removed-files")));
try {
for (String removedFileName = reader.readLine();
removedFileName != null;
removedFileName = reader.readLine()) {
File removedFile = new File(sGREDir, removedFileName);
if (removedFile.exists()) removedFile.delete();
}
} finally {
reader.close();
}
}
public static boolean deleteAll(File file) {
boolean b = true;
if ((file != null) && file.exists()) {
if (file.isDirectory()) {
try {
File[] files = file.listFiles();
for (File f : files) b &= deleteAll(f);
} catch (Exception e) {
return false;
}
}
b &= file.delete();
}
return b;
}
@Override
public void save() {
NBTOutputStream stream = null;
try {
Files.createParentDirs(this.file);
final File temporaryFile =
File.createTempFile(this.file.getName(), null, this.file.getParentFile());
temporaryFile.deleteOnExit();
stream = new NBTOutputStream(new FileOutputStream(temporaryFile));
stream.writeTag(new CompoundTag(this.name, this.root));
stream.close();
this.file.delete();
temporaryFile.renameTo(this.file);
temporaryFile.delete();
} catch (IOException ex) {
ex.printStackTrace();
} finally {
try {
stream.close();
} catch (IOException ex2) {
}
}
}
private boolean saveAndVerify(ZipInputStream data) throws IOException {
try {
ZipEntry ze;
while ((ze = data.getNextEntry()) != null) {
// Filename + reference to file.
String filename = ze.getName();
File output = new File(local_path + filename);
if (filename.endsWith("/")) {
output.mkdirs();
} else {
if (output.exists()) {
// Delete the file if it already exists.
if (!output.delete()) {
return false;
}
}
if (output.createNewFile()) {
FileOutputStream out = new FileOutputStream(output);
byte[] buffer = new byte[1024];
int count;
while ((count = data.read(buffer)) != -1) {
out.write(buffer, 0, count);
}
} else {
return false;
}
}
}
} catch (Exception e) {
e.printStackTrace();
return false;
} finally {
data.close();
}
return true;
}
private void cleanup(File directory) {
// Clean up from old installations, removing or renaming files.
// Note that directory is the parent of the CTP directory
// unless the original installation was done by Bill Weadock's
// all-in-one installer for Windows.
// Get a file pointing to the CTP directory.
// This might be the current directory, or
// it might be the CTP child.
File dir;
if (directory.getName().equals("RSNA")) dir = directory;
else dir = new File(directory, "CTP");
// If CTP.jar exists in this directory, it is a really
// old CTP main file - not used anymore
File ctp = new File(dir, "CTP.jar");
if (ctp.exists()) ctp.delete();
// These are old names for the Launcher.jar file
File launcher = new File(dir, "CTP-launcher.jar");
if (launcher.exists()) launcher.delete();
launcher = new File(dir, "TFS-launcher.jar");
if (launcher.exists()) launcher.delete();
// Delete the obsolete CTP-runner.jar file
File runner = new File(dir, "CTP-runner.jar");
if (runner.exists()) runner.delete();
// Delete the obsolete MIRC-copier.jar file
File copier = new File(dir, "MIRC-copier.jar");
if (copier.exists()) copier.delete();
// Rename the old versions of the properties files
File oldprops = new File(dir, "CTP-startup.properties");
File newprops = new File(dir, "CTP-launcher.properties");
File correctprops = new File(dir, "Launcher.properties");
if (oldprops.exists()) {
if (newprops.exists() || correctprops.exists()) oldprops.delete();
else oldprops.renameTo(correctprops);
}
if (newprops.exists()) {
if (correctprops.exists()) newprops.delete();
else newprops.renameTo(correctprops);
}
// Get rid of obsolete startup and shutdown programs
File startup = new File(dir, "CTP-startup.jar");
if (startup.exists()) startup.delete();
File shutdown = new File(dir, "CTP-shutdown.jar");
if (shutdown.exists()) shutdown.delete();
// Get rid of the obsolete linux directory
File linux = new File(dir, "linux");
if (linux.exists()) {
startup = new File(linux, "CTP-startup.jar");
if (startup.exists()) startup.delete();
shutdown = new File(linux, "CTP-shutdown.jar");
if (shutdown.exists()) shutdown.delete();
linux.delete();
}
// clean up the libraries directory
File libraries = new File(dir, "libraries");
if (libraries.exists()) {
// remove obsolete versions of the slf4j libraries
// and the dcm4che-imageio libraries
File[] files = libraries.listFiles();
for (File file : files) {
if (file.isFile()) {
String name = file.getName();
if (name.startsWith("slf4j-") || name.startsWith("dcm4che-imageio-rle")) {
file.delete();
}
}
}
// remove the email subdirectory
File email = new File(libraries, "email");
deleteAll(email);
// remove the xml subdirectory
File xml = new File(libraries, "xml");
deleteAll(xml);
// remove the sftp subdirectory
File sftp = new File(libraries, "sftp");
deleteAll(xml);
// move edtftpj.jar to the ftp directory
File edtftpj = new File(libraries, "edtftpj.jar");
if (edtftpj.exists()) {
File ftp = new File(libraries, "ftp");
ftp.mkdirs();
File ftpedtftpj = new File(ftp, "edtftpj.jar");
edtftpj.renameTo(ftpedtftpj);
}
}
// remove the obsolete xml library under dir
File xml = new File(dir, "xml");
deleteAll(xml);
// remove the dicom profiles so any
// obsolete files will disappear
File profiles = new File(dir, "profiles");
File dicom = new File(profiles, "dicom");
deleteAll(dicom);
dicom.mkdirs();
// Remove the index.html file so it will be rebuilt from
// example-index.html when the system next starts.
File root = new File(dir, "ROOT");
if (root.exists()) {
File index = new File(root, "index.html");
index.delete();
}
}
/** The run method. */
public void run() {
instances.add(this);
try {
listener.startUnpack();
String currentOs = System.getProperty("os.name").toLowerCase();
//
// Initialisations
FileOutputStream out = null;
ArrayList parsables = new ArrayList();
ArrayList executables = new ArrayList();
List packs = idata.selectedPacks;
int npacks = packs.size();
udata = UninstallData.getInstance();
// Specific to the web installers
if (idata.kind.equalsIgnoreCase("web") || idata.kind.equalsIgnoreCase("web-kunststoff")) {
InputStream kin = getClass().getResourceAsStream("/res/WebInstallers.url");
BufferedReader kreader = new BufferedReader(new InputStreamReader(kin));
jarLocation = kreader.readLine();
}
// We unpack the selected packs
for (int i = 0; i < npacks; i++) {
// We get the pack stream
int n = idata.allPacks.indexOf(packs.get(i));
ObjectInputStream objIn = new ObjectInputStream(getPackAsStream(n));
// We unpack the files
int nfiles = objIn.readInt();
listener.changeUnpack(0, nfiles, ((Pack) packs.get(i)).name);
for (int j = 0; j < nfiles; j++) {
// We read the header
PackFile pf = (PackFile) objIn.readObject();
if (null == pf.os || matchOS(currentOs, pf.os.toLowerCase())) {
// We translate & build the path
String path = translatePath(pf.targetPath);
File pathFile = new File(path);
String fname = pathFile.getName();
int z = fname.length();
File dest = pathFile.getParentFile();
if (!dest.exists()) dest.mkdirs();
// We add the path to the log,
udata.addFile(path);
listener.progressUnpack(j, path);
// if this file exists and shouldnot override skip this file
if (((pf.override == false) && (pathFile.exists()))) {
objIn.skip(pf.length);
continue;
}
// We copy the file
out = new FileOutputStream(path);
byte[] buffer = new byte[5120];
long bytesCopied = 0;
while (bytesCopied < pf.length) {
int maxBytes =
(pf.length - bytesCopied < buffer.length
? (int) (pf.length - bytesCopied)
: buffer.length);
int bytesInBuffer = objIn.read(buffer, 0, maxBytes);
if (bytesInBuffer == -1) throw new IOException("Unexpected end of stream");
out.write(buffer, 0, bytesInBuffer);
bytesCopied += bytesInBuffer;
}
// Cleanings
out.close();
// Empty dirs restoring
String _n = pathFile.getName();
if (_n.startsWith("izpack-keepme") && _n.endsWith(".tmp")) pathFile.delete();
} else objIn.skip(pf.length);
}
// Load information about parsable files
int numParsables = objIn.readInt();
int k;
for (k = 0; k < numParsables; k++) {
ParsableFile pf = (ParsableFile) objIn.readObject();
pf.path = translatePath(pf.path);
parsables.add(pf);
}
// Load information about executable files
int numExecutables = objIn.readInt();
for (k = 0; k < numExecutables; k++) {
ExecutableFile ef = (ExecutableFile) objIn.readObject();
ef.path = translatePath(ef.path);
if (null != ef.argList && !ef.argList.isEmpty()) {
String arg = null;
for (int j = 0; j < ef.argList.size(); j++) {
arg = (String) ef.argList.get(j);
arg = translatePath(arg);
ef.argList.set(j, arg);
}
}
executables.add(ef);
if (ef.executionStage == ExecutableFile.UNINSTALL) {
udata.addExecutable(ef);
}
}
objIn.close();
}
// We use the scripts parser
ScriptParser parser = new ScriptParser(parsables, vs);
parser.parseFiles();
// We use the file executor
FileExecutor executor = new FileExecutor(executables);
if (executor.executeFiles(ExecutableFile.POSTINSTALL) != 0)
javax.swing.JOptionPane.showMessageDialog(
null,
"The installation was not completed.",
"Installation warning",
javax.swing.JOptionPane.WARNING_MESSAGE);
// We put the uninstaller
putUninstaller();
// The end :-)
listener.stopUnpack();
} catch (Exception err) {
listener.stopUnpack();
listener.errorUnpack(err.toString());
}
instances.remove(instances.indexOf(this));
}
public static void deleteIfExists(File file) {
if (file.exists()) file.delete();
}
public static void deleteDirectory(File f) throws IOException {
if (f.isDirectory()) {
for (File c : f.listFiles()) deleteDirectory(c);
}
if (!f.delete()) throw new FileNotFoundException("Failed to delete file: " + f);
}
/** Starts main program with the specified arguments. */
public synchronized boolean run(String args[]) {
ok = true;
if (!parseArgs(args)) {
return false;
}
try {
if (cflag || uflag) {
if (fname != null) {
// The name of the zip file as it would appear as its own
// zip file entry. We use this to make sure that we don't
// add the zip file to itself.
zname = fname.replace(File.separatorChar, '/');
if (zname.startsWith("./")) {
zname = zname.substring(2);
}
}
}
if (cflag) {
Manifest manifest = null;
InputStream in = null;
if (!Mflag) {
if (mname != null) {
in = new FileInputStream(mname);
manifest = new Manifest(new BufferedInputStream(in));
} else {
manifest = new Manifest();
}
addVersion(manifest);
addCreatedBy(manifest);
if (isAmbiguousMainClass(manifest)) {
if (in != null) {
in.close();
}
return false;
}
if (ename != null) {
addMainClass(manifest, ename);
}
if (pname != null) {
if (!addProfileName(manifest, pname)) {
if (in != null) {
in.close();
}
return false;
}
}
}
OutputStream out;
if (fname != null) {
out = new FileOutputStream(fname);
} else {
out = new FileOutputStream(FileDescriptor.out);
if (vflag) {
// Disable verbose output so that it does not appear
// on stdout along with file data
// error("Warning: -v option ignored");
vflag = false;
}
}
expand(null, files, false);
create(new BufferedOutputStream(out, 4096), manifest);
if (in != null) {
in.close();
}
out.close();
} else if (uflag) {
File inputFile = null, tmpFile = null;
FileInputStream in;
FileOutputStream out;
if (fname != null) {
inputFile = new File(fname);
tmpFile = createTempFileInSameDirectoryAs(inputFile);
in = new FileInputStream(inputFile);
out = new FileOutputStream(tmpFile);
} else {
in = new FileInputStream(FileDescriptor.in);
out = new FileOutputStream(FileDescriptor.out);
vflag = false;
}
InputStream manifest = (!Mflag && (mname != null)) ? (new FileInputStream(mname)) : null;
expand(null, files, true);
boolean updateOk = update(in, new BufferedOutputStream(out), manifest, null);
if (ok) {
ok = updateOk;
}
in.close();
out.close();
if (manifest != null) {
manifest.close();
}
if (ok && fname != null) {
// on Win32, we need this delete
inputFile.delete();
if (!tmpFile.renameTo(inputFile)) {
tmpFile.delete();
throw new IOException(getMsg("error.write.file"));
}
tmpFile.delete();
}
} else if (tflag) {
replaceFSC(files);
if (fname != null) {
list(fname, files);
} else {
InputStream in = new FileInputStream(FileDescriptor.in);
try {
list(new BufferedInputStream(in), files);
} finally {
in.close();
}
}
} else if (xflag) {
replaceFSC(files);
if (fname != null && files != null) {
extract(fname, files);
} else {
InputStream in =
(fname == null) ? new FileInputStream(FileDescriptor.in) : new FileInputStream(fname);
try {
extract(new BufferedInputStream(in), files);
} finally {
in.close();
}
}
} else if (iflag) {
genIndex(rootjar, files);
}
} catch (IOException e) {
fatalError(e);
ok = false;
} catch (Error ee) {
ee.printStackTrace();
ok = false;
} catch (Throwable t) {
t.printStackTrace();
ok = false;
}
out.flush();
err.flush();
return ok;
}
