protected void addMetaDataToNetwork(Network network) { if (networkMetadata.size() == 0) { return; } Tuple metadata = new Tuple(); Set<String> keys = networkMetadata.keySet(); for (Iterator<String> it = keys.iterator(); it.hasNext(); ) { String key = it.next(); metadata.addSingle(new Single(key, networkMetadata.get(key))); } network.setMetadata(metadata); }
protected GaggleTuple createGaggleTupleForBroadcast( String tupleName, String[] names, Serializable[] values) { Tuple tuple = new Tuple(); for (int i = 0; i < names.length; i++) { tuple.addSingle(new Single(names[i], values[i])); } GaggleTuple gaggleTuple = new GaggleTuple(); gaggleTuple.setName(tupleName); gaggleTuple.setData(tuple); gaggleTuple.setSpecies(defaultSpecies); return gaggleTuple; }
/** * Broadcasts a Cytoscape movie style tuple which assigns the value of a single attribute to the * nodes listed in allNames. [is this correct? -jcb] * * @param title * @param attributeName * @param allNames * @param allValues */ public void createAndBroadcastGaggleTuple( String title, String attributeName, String[] allNames, String[] allValues) { Class valueClass = getValueType(allValues); GaggleTuple gaggleTuple = new GaggleTuple(); gaggleTuple.setName(title); Tuple metadata = new Tuple(); metadata.addSingle(new Single(title)); gaggleTuple.setMetadata(metadata); Tuple dataTuple = new Tuple(); dataTuple.setName(title); gaggleTuple.setSpecies(defaultSpecies); for (int i = 0; i < allNames.length; i++) { Serializable value; if (valueClass.equals(Integer.class)) { value = Integer.valueOf(allValues[i]); } else if (valueClass.equals(Double.class)) { value = Double.valueOf(allValues[i]); } else { // string String s = allValues[i]; if (s.startsWith("|") && s.endsWith("|")) { value = s.substring(1, s.length() - 1); } else { value = allValues[i]; } } Tuple row = new Tuple(); row.addSingle(new Single(allNames[i])); row.addSingle(new Single(attributeName)); row.addSingle(new Single(value)); dataTuple.addSingle(new Single(row)); } gaggleTuple.setData(dataTuple); broadcastGaggleTuple(gaggleTuple); }
// ---------------------------------------------------------------------------------------- // todo update method names (make sure calls in R side match) public void createAndBroadcastHashMap( String title, String attributeName, String[] names, double[] values) { GaggleTuple gaggleTuple = new GaggleTuple(); gaggleTuple.setName(title); Tuple tuple = new Tuple(title); for (int i = 0; i <= names.length; i++) { tuple.addSingle(new Single(names[i], values[i])); } gaggleTuple.setData(tuple); gaggleTuple.setSpecies(defaultSpecies); try { gaggleBoss.broadcastTuple(myGaggleName, targetGoose, gaggleTuple); } catch (RemoteException rex) { System.err.println("error broadcasting hashmap from RShellGoose " + myGaggleName); rex.printStackTrace(); } } // createAndBroadcastHashMap (double [] values)