/**
* Remove a student from a particular course. Also Deletes all the quiz vizualisation files in the
* student's directory which relates to the course. Caution: vizualisation file will be deleted
* eventhough it also relates to another course if the student is also registered to that course.
* (FIX ME!) Throws InvalidDBRequestException if the student is not registered in the course,
* error occured during deletion, or other exception occured.
*
* @param username student's user name
* @param courseID course id (course number + instructor name)
* @throws InvalidDBRequestException
*/
public void deleteStudent(String username, String courseID) throws InvalidDBRequestException {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
int count = 0;
// check if student registered to the course
rs =
stmt.executeQuery(
"select * from courseRoster where course_id = '"
+ courseID
+ "' and user_login = '******'");
if (!rs.next())
throw new InvalidDBRequestException("Student is not registered to the course");
// remove student from the course
count =
stmt.executeUpdate(
"delete from courseRoster where course_id = '"
+ courseID
+ "' and user_login = '******'");
if (count != 1) throw new InvalidDBRequestException("Error occured during deletion!");
// delete the quiz visualization files
rs =
stmt.executeQuery(
"select distinct unique_id, s.test_name from scores s, courseTest t "
+ "where s.test_name = t.test_name "
+ "and course_id = '"
+ courseID
+ "' "
+ "and user_login = '******'");
while (rs.next()) {
deleteVisualization(rs.getString(1), username, rs.getString(2));
count =
stmt.executeUpdate("delete from scores where unique_id = " + rs.getString(1).trim());
}
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addstudent: " + e.getMessage());
throw new InvalidDBRequestException("???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
/**
* Deletes an instructor from the database. Deletes the instructor's courses by invoking the
* deleteCourse method. Throws InvalidDBRequestException if instructor not in the database or
* other database connection problems.
*
* @see deleteCourse
* @param instructor instructor's user name
* @throws InvalidDBRequestException
*/
public void deleteInstructor(String instructor) throws InvalidDBRequestException {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
int count;
// delete the instructor's courses
ResultSet rs =
stmt.executeQuery(
"select course_num from course where instructor = '" + instructor + "'");
while (rs.next()) deleteCourse(rs.getString(1).trim(), instructor);
// delete the instructor's record
count = stmt.executeUpdate("delete from instructor where login ='******'");
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addCourse: " + e.getMessage());
throw new InvalidDBRequestException("??? ");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
/**
* Delete a student from the database. Also deletes the student's folders. Throws
* InvalidDBRequestException if any error in database connection.
*
* @param username student's user name
* @throws InvalidDBRequestException
*/
private void purgeStudent(String username) throws InvalidDBRequestException {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
int count;
// delete from scores
count = stmt.executeUpdate("delete from scores where user_login = '******'");
// delete from student
count = stmt.executeUpdate("delete from student where login = '******'");
// delete student's folder
File studentDir = new File("./StudentQuizzes/" + username);
if (!(studentDir.delete())) {
System.err.println("Error in deleting folder for student: " + username);
}
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addCourse: " + e.getMessage());
throw new InvalidDBRequestException("??? ");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
/**
* Gets a list of courses that belongs to an instructor. Throws InvalidDBRequestException if any
* error occured to the database connection.
*
* @param name the instructor's user name
* @return a vector containing the list of courses
* @throws InvalidDBRequestException
*/
public Vector getCourseList(String name) throws InvalidDBRequestException {
Vector courseList = new Vector();
try {
Connection db;
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
// get the course list
rs =
stmt.executeQuery(
"select course_num, course_name from course where instructor = '"
+ name
+ "' order by course_num");
while (rs.next()) courseList.add(rs.getString(1) + " - " + rs.getString(2));
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in getCourseList: " + e.getMessage());
throw new InvalidDBRequestException("???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Server Error");
}
return courseList;
}
/**
* Check the user's name and password and verify that the user is an instructor. Throws
* InvalidDBRequestException if user is not an instructor, wrong password, or if any error occured
* to the database connection.
*
* @param name user's user name
* @param pass user's password
* @throws InvalidDBRequestException
*/
public void instructorLogin(String name, String pass) throws InvalidDBRequestException {
try {
Connection db;
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
// check if instructor
rs = stmt.executeQuery("select password from instructor where login = '******'");
if (!rs.next()) {
if (debug) System.out.println("User not found in the instructor table");
throw new InvalidDBRequestException("Instructor not registered");
}
// check password
if (!rs.getString(1).equals(pass)) {
if (debug) System.out.println("Invalid password for user: "******"Invalid password for user: "******"Invalid SQL in instructor login: "******"???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Server Error");
}
}
/**
* Deletes students who are older than a certain number of years and not registered to any course.
*
* @param year students older than year are candidates to be deleted
* @throws InvalidDBRequestException
*/
public void deleteOldStudent(int year) throws InvalidDBRequestException {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
// query all student who have been in the database longer than a number of years and not
// registered to any course
ResultSet rs =
stmt.executeQuery(
"select login, count(course_id) "
+ "from student s left join courseRoster r on login = user_login "
+ "where date_entered < SUBDATE(now(), INTERVAL "
+ new String().valueOf(year).trim()
+ " YEAR) "
+ "group by login, date_entered");
// delete them
while (rs.next()) if (rs.getInt(2) == 0) purgeStudent(rs.getString(1).trim());
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addCourse: " + e.getMessage());
throw new InvalidDBRequestException("??? ");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
/**
* Consulta as fatos do prestador passado em um determinado periodo
*
* @param strCdContrato - o codigo do contrato do prestado do qual se deseja obter as fatos
* @param strNumPeriodo - o periodo de referencia do qual se deseja obter os fatos
* @return um array de fatos do prestador fornecido como paramentro
*/
public static final ResumoFato[] buscaResumoFato(String strCdContrato, String strNumPeriodo)
throws Exception {
Connection con = ConnectionPool.getConnection();
ResumoFato[] fatos = null;
PreparedStatement pst;
ResultSet rset;
int qtdeFatos = 0;
try {
pst = con.prepareStatement(CONSULTA_RESUMO_FATO);
pst.setString(1, strCdContrato);
pst.setString(2, strNumPeriodo);
pst.setString(3, strCdContrato);
pst.setString(4, strNumPeriodo);
pst.setString(5, strCdContrato);
pst.setString(6, strNumPeriodo);
pst.setString(7, strCdContrato);
pst.setString(8, strNumPeriodo);
pst.setString(9, strCdContrato);
pst.setString(10, strNumPeriodo);
rset = pst.executeQuery();
if (!rset.next()) {
return null;
} // if ( ! rset.next() )
do {
qtdeFatos += 1;
} while (rset.next());
System.out.println("qtdeFatos -> " + qtdeFatos);
fatos = new ResumoFato[qtdeFatos];
rset = pst.executeQuery();
qtdeFatos = 0;
while (rset.next()) {
fatos[qtdeFatos] = montaResumoFato(rset);
qtdeFatos++;
} // while
} catch (SQLException sqle) {
sqle.printStackTrace();
throw new Exception(
"Não foi possivel estabelecer conexão com a base de "
+ "dados.Erro:\n"
+ sqle.getMessage());
} finally { // catch()
if (con != null) {
con.close();
System.out.println("Fechou a conexao");
} // if
}
return fatos;
} // buscaResumoFato()
/**
* Obtains information on a quiz that a student has taken, which includes the student's answer to
* the quiz, a unique id of the instance, number of questions in the quiz, number of questions
* answered correctly, and vizualisation type of the quiz. Throws InvalidDBRequestException if
* cannot find the record of the stuent taking the quiz, quiz is not registered in the database,
* or if any error occured to the database connection.
*
* @param student student's user name
* @param quiz quiz name
* @param startTime the time the student started the quiz
* @return a string tokenizer containing: answer,uniqueID, numQuestions, numCorrect, and
* visualType. It uses "@" as the delimiter.
* @throws InvalidDBRequestException
*/
public StringTokenizer getAnswerAndVisualType(String student, String quiz, String startTime)
throws InvalidDBRequestException {
String answer;
String uniqueID;
String numQuestions;
String numCorrect;
String visualType;
try {
Connection db;
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
// get student's answer, unique id, number of questions, and number of questions answered
// correctly
rs =
stmt.executeQuery(
"select transcript, unique_id, num_questions, num_correct from scores "
+ "where test_name = '"
+ quiz
+ "' and user_login = '******' and start_time = '"
+ startTime
+ "'");
if (!rs.next()) throw new InvalidDBRequestException("Student has not taken the quiz");
else {
answer = rs.getString(1).trim();
uniqueID = rs.getString(2).trim();
numQuestions = rs.getString(3).trim();
numCorrect = rs.getString(4).trim();
}
// get quiz vizualisation type
rs = stmt.executeQuery("select visual_type from test where name = '" + quiz + "' ");
if (!rs.next())
throw new InvalidDBRequestException(
"Quiz was not found! Can't retrieve visualization type.");
else {
visualType = rs.getString(1);
}
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in getAnswerAndVisualType: " + e.getMessage());
throw new InvalidDBRequestException("???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
return new StringTokenizer(
answer + "@" + uniqueID + "@" + numQuestions + "@" + numCorrect + "@" + visualType, "@");
}
/**
* Query a quiz list from the database. If there is no student user name specified, the list will
* contain all quizzes that are used in the instructor's courses. Otherwise, the list will contain
* all quizzes that the student has taken and from the instructor's courses which the student is
* registered. Throws InvalidDBRequestException if any error occured to the database connection.
*
* @param instructor instructor's user name
* @param student student's user name. Can be empty to get a list of all quizzes in the
* instructor's courses.
* @return a vector containing the list of quizzes
* @throws InvalidDBRequestException
*/
public Vector getQuizList(String instructor, String student) throws InvalidDBRequestException {
Vector list = new Vector();
try {
Connection db;
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
if (!student.equals("")) {
// get the list that contains all quizzes that the student has taken and from the
// instructor's courses which the student is registered
rs =
stmt.executeQuery(
"select courseTest.test_name, scores.start_time from scores, courseTest, course "
+ "where courseTest.test_name = scores.test_name "
+ "and courseTest.course_id = course.course_id "
+ "and instructor = '"
+ instructor
+ "' and user_login = '******' "
+ "order by scores.start_time");
while (rs.next()) {
list.add(rs.getString(1) + " <" + rs.getString(2) + ">");
}
} else {
// get the list that contains all quizzes that are used in the instructor's courses
rs =
stmt.executeQuery(
"select test_name from courseTest, course "
+ "where courseTest.course_id = course.course_id "
+ "and instructor = '"
+ instructor
+ "' ");
while (rs.next()) {
list.add(rs.getString(1));
}
}
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in getQuizList: " + e.getMessage());
throw new InvalidDBRequestException("???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
return list;
}
/**
* Consulta as glosas do prestador passado em um determinado periodo
*
* @param strCdContrato - o codigo do contrato do prestado do qual se deseja obter as glosas
* @param strNumPeriodo - o periodo de referencia do qual se deseja obter os glosas
* @return um array de glosas do prestador fornecido como paramentro
*/
public static final GlosaPrestador[] buscaGlosaPrest(String strCdContrato, String strNumPeriodo)
throws Exception {
Connection con = ConnectionPool.getConnection();
GlosaPrestador[] glosas = null;
PreparedStatement pst;
ResultSet rset;
int qtdeGlosas = 0;
try {
pst = con.prepareStatement(CONSULTA_GLOSA);
pst.setString(1, strCdContrato);
pst.setString(2, strNumPeriodo);
rset = pst.executeQuery();
if (!rset.next()) {
return null;
} // if ( ! rset.next() )
do {
qtdeGlosas += 1;
} while (rset.next());
System.out.println("qtdeGlosas -> " + qtdeGlosas);
glosas = new GlosaPrestador[qtdeGlosas];
pst = con.prepareStatement(CONSULTA_GLOSA);
pst.setString(1, strCdContrato);
pst.setString(2, strNumPeriodo);
rset = pst.executeQuery();
qtdeGlosas = 0;
while (rset.next()) {
glosas[qtdeGlosas] = montaGlosaPrestador(rset);
qtdeGlosas++;
} // while
} catch (SQLException sqle) {
sqle.printStackTrace();
throw new Exception(
"Não foi possivel estabelecer conexão com a base de "
+ "dados.Erro:\n"
+ sqle.getMessage());
} finally { // catch()
if (con != null) {
con.close();
System.out.println("Fechou a conexao");
} // if
}
return glosas;
} // consultaGlosaPrest()
/**
* Add a course into the database if not already so. Throws InvalidDBRequestException if course
* already in the DB, error occured during insertion, or other exception occured.
*
* @param courseNum course number
* @param courseName name of the course
* @param instructor name of the instructor who owns the course
* @throws InvalidDBRequestException
*/
public void addCourse(String courseNum, String courseName, String instructor)
throws InvalidDBRequestException {
String courseId = courseNum + instructor;
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
int count = 0;
// check if course already in the database
rs = stmt.executeQuery("select course_id from course where course_id = '" + courseId + "'");
if (rs.next()) throw new InvalidDBRequestException("Course is already in the database");
// insert course into database
count =
stmt.executeUpdate(
"insert into course values ('"
+ courseId
+ "', '"
+ courseName
+ "', '"
+ courseNum
+ "', '"
+ instructor
+ "')");
if (count != 1) throw new InvalidDBRequestException("Something happen during insertion!");
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addCourse: " + e.getMessage());
throw new InvalidDBRequestException("??? ");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
/**
* Private method to delete a visualization script file of a quiz taken by a student.
*
* @param uniqueId a unique number of that indicates the instance of the quiz taking in the
* database
* @param studentName student's user name
* @param testName quiz name
*/
private void deleteVisualization(String uniqueId, String studentName, String testName) {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
// get quiz visulization type
ResultSet rs =
stmt.executeQuery("select visual_type from test where name = '" + testName + "'");
// construct the quiz vizualisation file name
String visFileName =
new String("./StudentQuizzes/" + studentName + "/" + testName + uniqueId);
if (rs.next())
if (rs.getString(1).trim().equalsIgnoreCase("gaigs")) visFileName = visFileName + ".sho";
else if (rs.getString(1).trim().equalsIgnoreCase("samba"))
visFileName = visFileName + ".sam";
else if (rs.getString(1).trim().equalsIgnoreCase("animal"))
visFileName = visFileName + ".ani";
else {
System.err.println("visualization type unknown for quiz: " + rs.getString(3) + "\n");
}
else {
System.err.println("Visulization type not found for quiz: " + rs.getString(3) + "\n");
}
// delete the file
File visFile = new File(visFileName);
if (debug) System.out.println("deleting " + visFileName);
if (visFile.exists())
if (!visFile.delete()) System.err.println("can't delete the visualization file");
rs.close();
stmt.close();
db.close();
} catch (Exception e) {
System.err.println("Execption thrown from deleteVisualisation: " + e.getMessage());
}
}
/**
* Deletes a course from the database. Also deletes all the quiz visualization files from the
* students' folder who is registered in the course for all quizzes related to the course.
* Caution: vizualisation file will be deleted eventhough it also relates to anther course if the
* student is also registered to that course. (FIX ME!) Throws InvalidDBRequestException if the
* course is not in the database, error occured during deletion, or other exception occured.
*
* @param courseNum course number
* @param instructor instructor's user name who owns the course
* @throws InvalidDBRequestException
*/
public void deleteCourse(String courseNum, String instructor) throws InvalidDBRequestException {
String courseId = new String(courseNum + instructor);
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
int count = 0;
// check if course in the database
rs = stmt.executeQuery("select course_id from course where course_id = '" + courseId + "'");
if (!rs.next()) throw new InvalidDBRequestException("Course is not in the database");
else {
// delete course from course table
count = stmt.executeUpdate("delete from course where course_id = '" + courseId + "'");
if (count != 1) throw new InvalidDBRequestException("Something happen during deletion!");
else {
// delete quiz visualization files
rs =
stmt.executeQuery(
"select distinct unique_id, s.user_login, s.test_name from scores s, courseRoster r, courseTest t "
+ "where s.test_name = t.test_name "
+ "and r.user_login = s.user_login "
+ "and r.course_id = t.course_id "
+ "and t.course_id = '"
+ courseId
+ "'");
while (rs.next()) {
deleteVisualization(
rs.getString(1).trim(), rs.getString(2).trim(), rs.getString(3).trim());
count =
stmt.executeUpdate(
"delete from scores where unique_id = " + rs.getString(1).trim());
}
// delete course from other tables
count =
stmt.executeUpdate("delete from courseRoster where course_id = '" + courseId + "'");
count = stmt.executeUpdate("delete from courseTest where course_id = '" + courseId + "'");
// delete menu file
File menuFile = new File("./html_root/cat/" + courseId + ".list");
if (menuFile.exists())
if (!menuFile.delete()) System.err.println("Failed to delete the menu");
}
}
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addCourse: " + e.getMessage());
throw new InvalidDBRequestException("??? ");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
/**
* Query students grades for a course on a particular quiz Throws InvalidDBRequestException if
* quiz is not used in the course, or if any error occured to the database connection.
*
* @param courseID course unique id
* @param quizname quiz unique name
* @return a vector that contains the students information and the grades
* @throws InvalidDBRequestException
*/
public Vector getQuizGrades(String courseID, String quizName) throws InvalidDBRequestException {
Vector grades = new Vector();
try {
Connection db;
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
rs =
stmt.executeQuery(
"select valid from courseTest where course_id = '"
+ courseID
+ "' and test_name = '"
+ quizName
+ "'");
if (rs.next()) {
rs =
stmt.executeQuery(
"select login, last_name, first_name, start_time, num_questions, num_correct from student, scores, courseRoster "
+ "where student.login = scores.user_login "
+ "and scores.user_login = courseRoster.user_login "
+ "and scores.test_name = '"
+ quizName
+ "' "
+ "and course_id = '"
+ courseID
+ "' "
+ "order by last_name, first_name, login, scores.start_time");
// use @ as delimiter since the date_time contains space
while (rs.next())
grades.add(
rs.getString(1)
+ "@"
+ rs.getString(2)
+ "@"
+ rs.getString(3)
+ "@"
+ rs.getString(4)
+ "@"
+ rs.getString(5)
+ "@"
+ rs.getString(6));
} else throw new InvalidDBRequestException("Quiz is not used for the course");
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in instructor login: "******"???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Server Error");
}
return grades;
}
/**
* Changes the password of a user. Throws InvalidNameException if user's not registered in the
* database. Throws InvalidPassException if user's password was invalid. Throws
* InvalidDBRequestException if error occured during insertion or other database connection
* problems.
*
* @param name user's user name
* @param pass user's password
* @param newPAss user's new password
* @throws InvalidNameException, InvalidPassException, InvalidDBRequestException
*/
public void changePassword(String name, String pass, String newPass)
throws InvalidNameException, InvalidPassException, InvalidDBRequestException {
try {
Connection db;
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
int count;
Statement stmt = db.createStatement();
ResultSet rs;
rs = stmt.executeQuery("select password from student where login = '******'");
// check if it's not a student in database
if (!rs.next()) {
rs = stmt.executeQuery("select password from instructor where login = '******'");
// check if it's an instructor in database
if (!rs.next()) {
if (debug) System.out.println("User not found in the user table");
throw new InvalidNameException("User not registered");
}
// check for password
if (!rs.getString(1).equals(pass)) {
if (debug) System.out.println("Invalid password for user: "******"Invalid password for user: "******"update instructor set password = '******' where login = '******' and password ='******'");
} else {
// check for password
if (!rs.getString(1).equals(pass)) {
if (debug) System.out.println("Invalid password for user: "******"Invalid password for user: "******"update student set password = '******' where login = '******' and password ='******'");
}
// check if successful
if (count != 1) {
System.err.println("Error in updating password");
throw new InvalidDBRequestException("Error in updating password");
}
rs.close();
stmt.close();
db.close();
} catch (SQLException e) // catch sql exception
{
System.err.println("Invalid SQL in ChangePassword: "******"Server request error: " + e.getMessage());
} catch (ClassNotFoundException e) // catch driver not found exception
{
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Server Error");
}
}
/**
* Add a quiz to a course if not already so. Also write the menu file for the course. Throws
* InvalidDBRequestException if quiz already in the course, error occured during insertion, or
* other exception occured. Throws FileFailureException if fail to append quiz to the menu.
*
* @param quizname the quiz name
* @param courseID the course id (course number + instructor name)
* @throws InvalidDBRequestException
*/
public void addQuiz(String quizName, String courseID)
throws InvalidDBRequestException, FileFailureException {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
Statement cstmt = db.createStatement();
ResultSet rs, courseRS;
int count = 0;
// get quiz info
courseRS =
cstmt.executeQuery(
"select menu_text, script_type, visual_type from test where name = '"
+ quizName
+ "'");
// check if quiz in the database
if (!courseRS.next())
throw new InvalidDBRequestException("Quiz is not registered in the database");
else {
// check if quiz already in the course
rs =
stmt.executeQuery(
"select test_name from courseTest where test_name = '"
+ quizName
+ "' and course_id = '"
+ courseID
+ "'");
if (rs.next()) throw new InvalidDBRequestException("Quiz is already added for the course");
else {
count =
stmt.executeUpdate(
"insert into courseTest (course_id, test_name) values ('"
+ courseID
+ "', '"
+ quizName
+ "')");
if (count != 1) throw new InvalidDBRequestException("Error occured during insertion");
else {
// append quiz info to the course menu
try {
PrintWriter fileOStream =
new PrintWriter(
new FileOutputStream("./html_root/cat/" + courseID + ".list", true));
if (debug)
System.out.println(
courseRS.getString(1).trim()
+ "\n"
+ quizName
+ " "
+ courseRS.getString(2).trim()
+ " "
+ courseRS.getString(3).trim().toLowerCase()
+ "\n****\n");
fileOStream.print(
courseRS.getString(1).trim()
+ "\n"
+ quizName
+ " "
+ courseRS.getString(2).trim()
+ " "
+ courseRS.getString(3).trim().toLowerCase()
+ "\n****\n");
fileOStream.flush();
fileOStream.close();
} catch (Exception e) {
System.err.println("Error in creating the menu: " + e.getMessage());
throw new FileFailureException("Error in creating the menu: " + e.getMessage());
}
}
}
}
courseRS.close();
rs.close();
stmt.close();
cstmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addQuiz: " + e.getMessage());
throw new InvalidDBRequestException("??? ");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
/**
* Remove a quiz from a course. Also deletes all the quiz visualization files from the students'
* folder who is registered in the course. Caution: vizualisation file will be deleted eventhough
* it also relates to anther course if the student is also registered to that course. (FIX ME!)
* Throws InvalidDBRequestException if the quiz is not registered in the course, error occured
* during deletion, or other exception occured.
*
* @param quizName quiz name
* @param courseID course id (course number + instructor name)
* @throws InvalidDBRequestException
*/
public void deleteQuiz(String quizName, String courseID)
throws InvalidDBRequestException, FileFailureException {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
int count = 0;
// check if quiz is used in the course
rs =
stmt.executeQuery(
"select test_name from courseTest where test_name = '"
+ quizName
+ "' and course_id = '"
+ courseID
+ "'");
if (!rs.next()) throw new InvalidDBRequestException("Quiz is not registered for the course");
else {
// remove quiz from course
count =
stmt.executeUpdate(
"delete from courseTest where course_id = '"
+ courseID
+ "' and test_name = '"
+ quizName
+ "'");
if (count != 1) throw new InvalidDBRequestException("Error occured during deletion");
else {
// delete quiz visualization files
rs =
stmt.executeQuery(
"select distinct unique_id, scores.user_login from scores, courseRoster "
+ "where courseRoster.user_login = scores.user_login "
+ "and course_id = '"
+ courseID
+ "' "
+ "and test_name = '"
+ quizName
+ "'");
while (rs.next()) {
deleteVisualization(rs.getString(1), rs.getString(2), quizName);
count =
stmt.executeUpdate(
"delete from scores where unique_id = " + rs.getString(1).trim());
}
// rewrite the menu for the course
rs =
stmt.executeQuery(
"select distinct menu_text, name, script_type, visual_type from test t, courseTest c "
+ "where t.name = c.test_name "
+ "and course_id = '"
+ courseID
+ "'");
PrintWriter fileOStream =
new PrintWriter(new FileOutputStream("./html_root/cat/" + courseID + ".list"));
while (rs.next()) {
if (debug)
System.out.println(
rs.getString(1).trim()
+ "\n"
+ rs.getString(2).trim()
+ " "
+ rs.getString(3).trim()
+ " "
+ rs.getString(4).trim().toLowerCase()
+ "\n****\n");
fileOStream.print(
rs.getString(1).trim()
+ "\n"
+ rs.getString(2).trim()
+ " "
+ rs.getString(3).trim()
+ " "
+ rs.getString(4).trim().toLowerCase()
+ "\n****\n");
}
fileOStream.flush();
fileOStream.close();
}
}
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addQuiz: " + e.getMessage());
throw new InvalidDBRequestException("??? ");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
} catch (Exception e) {
System.err.println("Error in recreating menu for course: " + courseID);
System.err.println(e.getMessage());
throw new FileFailureException();
}
}
/**
* Query a student list from the database. If quiz name is not specified, the list will contain
* all students who are registered in the instructor's courses. Otherwise, it will contain all
* students who has taken the quiz and are registered to the instructor's course(s) that use the
* quiz Throws InvalidDBRequestException if any error occured to the database connection.
*
* @param name instructor's user name
* @param quiz quiz name. Can be empty String to get the list of all students who are registered
* in the instructor's courses.
* @return a vector that contains the list of students
* @throws InvalidDBRequestException
*/
public Vector getStudentList(String name, String quiz) throws InvalidDBRequestException {
Vector list = new Vector();
try {
Connection db;
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
if (!quiz.equals("")) {
// get the list that contains all students who has taken the quiz and are registered to the
// instructor's course(s) that use the quiz
rs =
stmt.executeQuery(
"select login, last_name, first_name, scores.start_time from student, scores, courseRoster, course "
+ "where student.login = scores.user_login "
+ "and scores.user_login = courseRoster.user_login "
+ "and courseRoster.course_id = course.course_id "
+ "and scores.test_name = '"
+ quiz
+ "' "
+ "and instructor = '"
+ name
+ "' "
+ "order by last_name, first_name, login, scores.start_time");
while (rs.next()) {
list.add(
rs.getString(2)
+ ", "
+ rs.getString(3)
+ " ("
+ rs.getString(1)
+ ") <"
+ rs.getString(4)
+ ">");
}
} else {
// get the list that contains all students who are registered in the instructor's courses
rs =
stmt.executeQuery(
"select distinct login, last_name, first_name from student, courseRoster, course "
+ "where student.login = courseRoster.user_login "
+ "and courseRoster.course_id = course.course_id "
+ "and instructor = '"
+ name
+ "' "
+ "order by last_name, first_name, login");
while (rs.next()) {
list.add(rs.getString(2) + ", " + rs.getString(3) + " (" + rs.getString(1) + ")");
}
}
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in getStudentList: " + e.getMessage());
throw new InvalidDBRequestException("???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
return list;
}
public void start() {
Connection connection = null; // manages connection
Connection connection2 = null;
Statement statement = null; // query statement
Statement statement2 = null;
wm = new double[20][Data.windows_size];
String QueryKinasesName = "%" + Data.kinease + "%";
// data.code = data.codenames[3];
String QueryCodeName = Data.code;
int windows_size = Data.windows_size;
// int windows_size = 9;
int shift = windows_size / 2;
try {
Class.forName(JDBC_DRIVER); // load database driver class
for (windows_size = Data.windows_size; windows_size <= Data.windows_size; windows_size += 2) {
shift = windows_size / 2;
// establish connection to database
connection = DriverManager.getConnection(DATABASE_URL, "", "");
connection2 = DriverManager.getConnection(DATABASE_URL, "", "");
// create Statement for querying database
statement = connection.createStatement();
statement2 = connection2.createStatement();
String ACC = null;
String SEQUENCE = null;
String KINASES = null;
String LIKE = "LIKE";
// int POSITION = 0;
// int index = 0;
String temp = null;
// int numtemp = 0;
// int LENGTH = (int) 0;
// int count = 0;
double[] totalAAcount = new double[windows_size];
double weightmatrix[][] = new double[windows_size][128]; // windowssize;aa;
String statementquery1 =
"SELECT Mid(sequence,(position-"
+ shift
+ "),"
+ windows_size
+ ") AS TARGET, index,code,length,position,sequence FROM Dataset_041106 WHERE ((position-"
+ shift
+ ")>1) AND ((position +"
+ shift
+ ")<length) AND kinases "
+ LIKE
+ " '"
+ QueryKinasesName
+ "' AND (code LIKE '"
+ QueryCodeName
+ "')";
System.out.println("#" + statementquery1);
/// fout.println("#"+statementquery1);
ResultSet resultSet1 = statement.executeQuery(statementquery1);
int seqsize = 0;
while ((resultSet1.next())) {
String posseq = resultSet1.getString("TARGET");
seqsize = posseq.length();
if (posseq.charAt(0) != 'X' && posseq.charAt(seqsize - 1) != 'X') { // �h����t
for (int i = 0; i < seqsize; i++) {
weightmatrix[i][posseq.charAt(i)]++;
}
// possequence.addElement(posseq);
}
} // end while
char[] aaMap = {
'A', 'R', 'N', 'D', 'C', 'Q', 'E', 'G', 'H', 'I', 'L', 'K', 'M', 'F', 'P', 'S', 'T', 'W',
'Y', 'V', 'X'
};
double[] expmatrix = {
0.0701313443873091,
0.0582393695201718,
0.0359362961736045,
0.0520743144385134,
0.0172010453343506,
0.0498574962335004,
0.0796465136978452,
0.0624720283551962,
0.0241405228512130,
0.0416989778376737,
0.0934441156861220,
0.0632334844952389,
0.0213293464067050,
0.0324554733241482,
0.0651181982370858,
0.0881672518230193,
0.0524630941595624,
0.0101093184162382,
0.0244701177088640,
0.0578116909136386
};
// double[] aaMapfreq = new double[windows_size];
double freq = 0;
for (int j = 0; j < weightmatrix.length; j++) {
for (int i = 0; i < aaMap.length - 1; i++) {
totalAAcount[j] += weightmatrix[j][aaMap[i]];
}
}
for (int i = 0; i < aaMap.length - 1; i++) {
// profilefout.print(aaMap[i]);
for (int j = 0; j < windows_size; j++) {
freq = ((weightmatrix[j][aaMap[i]]) / (totalAAcount[j])) + 1;
wm[i][j] = Math.log10((freq / expmatrix[i])) / Math.log10(2.0);
// profilefout.print(","+aaMapfreq[i]);
}
// profilefout.println();
}
// fout.close();
// profilefout.close();
resultSet1.close();
connection.close();
}
} // end try
catch (ClassNotFoundException classNotFound) {
classNotFound.printStackTrace();
System.exit(1);
} catch (NullPointerException nullpointerException) {
nullpointerException.printStackTrace();
System.exit(1);
} catch (SQLException ex) {
/** @todo Handle this exception */
/* } catch (IOException ex) {
*/
/** @todo Handle this exception */
} catch (NoClassDefFoundError ex) {
} finally { // ensure statement and connection are closed properly
try {
statement.close();
statement2.close();
connection.close();
connection2.close();
} catch (Exception exception) { // end try
exception.printStackTrace();
System.exit(1);
} // end catch
} // end finally
} // end main
/**
* Add a student to a course if not already so. If student not registered in the student table
* yet, the user are required to enter the student information so that the student can be added.
* Throws InvalidDBRequestException if user name belongs to an instructor, student already
* registered in the course, student information differs than the one in the database, student
* information not available when needed, error occured during insertion, or if other exception
* occured Throws FileFailureException if fail to create folder for the student.
*
* @param username student's user name
* @param courseID course id (course number + instructor name)
* @param lastname student's last name
* @param firstname student's first name
* @param initPass initial password for the student
* @throws InvalidDBRequestException
*/
public void addStudent(
String courseID, String username, String lastName, String firstName, String initPass)
throws InvalidDBRequestException, FileFailureException {
try {
Class.forName(GaigsServer.DBDRIVER);
db =
DriverManager.getConnection(GaigsServer.DBURL, GaigsServer.DBLOGIN, GaigsServer.DBPASSWD);
Statement stmt = db.createStatement();
ResultSet rs;
int count = 0;
// check if user name belongs to an instructor
rs = stmt.executeQuery("select login from instructor where login = '******'");
if (rs.next()) throw new InvalidDBRequestException("User name is reserved by an instructor");
// check if student in the database or not
rs =
stmt.executeQuery(
"select last_name, first_name from student where login = '******'");
if (rs.next()) {
// check if user name belongs to another student
if (!lastName.equals("")
&& (!lastName.equalsIgnoreCase(rs.getString(1).trim())
|| !firstName.equalsIgnoreCase(rs.getString(2).trim())))
throw new InvalidDBRequestException(
"User name is used by: " + rs.getString(2).trim() + " " + rs.getString(1).trim());
} else {
// check if student's information is given
if (lastName.equals(""))
throw new InvalidDBRequestException(
"Student is not registered in the database. Please enter the student's name");
// insert student into hte database
count =
stmt.executeUpdate(
"insert into student values ('"
+ username
+ "', '"
+ lastName
+ "', '"
+ firstName
+ "', '"
+ initPass
+ "', now())");
if (count != 1) throw new InvalidDBRequestException("Error occured during insertion!");
// create student's folder
File newStudentDir = new File("./StudentQuizzes/" + username);
if (!(newStudentDir.mkdir())) {
System.err.println("Error in creating new folder for student: " + username);
throw new FileFailureException("huh");
}
}
// check if student is registered in the course
rs =
stmt.executeQuery(
"select * from courseRoster where course_id = '"
+ courseID
+ "' and user_login = '******'");
if (rs.next())
throw new InvalidDBRequestException("Student is already registered to the course");
// register student to the course
count =
stmt.executeUpdate(
"insert into courseRoster values ('" + courseID + "', '" + username + "')");
if (count != 1) throw new InvalidDBRequestException("Error occured during insertion!");
rs.close();
stmt.close();
db.close();
} catch (SQLException e) {
System.err.println("Invalid SQL in addstudent: " + e.getMessage());
throw new InvalidDBRequestException("???");
} catch (ClassNotFoundException e) {
System.err.println("Driver Not Loaded");
throw new InvalidDBRequestException("Internal Server Error");
}
}
