public AppletControl(String u, int w, int h, String user, String p) {
PARAMETERS.put("RemoteHost", u.split("//")[1].split(":")[0]);
PARAMETERS.put("RemotePort", u.split(":")[2].split("/")[0]);
System.out.println(PARAMETERS.toString());
this.url = u;
URL[] url = new URL[1];
try {
url[0] = new URL(u);
URLClassLoader load = new URLClassLoader(url);
try {
try {
app = (Applet) load.loadClass("aplug").newInstance();
app.setSize(w, h);
app.setStub(this);
app.setVisible(true);
} catch (InstantiationException ex) {
ex.printStackTrace();
} catch (IllegalAccessException ex) {
ex.printStackTrace();
}
} catch (ClassNotFoundException ex) {
ex.printStackTrace();
}
} catch (MalformedURLException ex) {
ex.printStackTrace();
}
}
public void run() {
boolean gotByePacket = false;
try {
/* stream to read from client */
ObjectInputStream fromClient = new ObjectInputStream(socket.getInputStream());
Packet packetFromClient;
/* stream to write back to client */
ObjectOutputStream toClient = new ObjectOutputStream(socket.getOutputStream());
// writer to the disk
// String file = "list";
// while (( packetFromClient = (Packet) fromClient.readObject()) != null) {
/* create a packet to send reply back to client */
packetFromClient = (Packet) fromClient.readObject();
Packet packetToClient = new Packet();
packetToClient.type = Packet.LOOKUP_REPLY;
packetToClient.data = new ArrayList<String>();
if (packetFromClient.type == Packet.LOOKUP_REQUEST) {
// called by client
System.out.println("Request from Client:" + packetFromClient.type);
packetToClient.type = Packet.LOOKUP_REPLY;
long start = packetFromClient.start;
long length = packetFromClient.length;
if (start > dict.size()) {
// set the error field, return
packetToClient.error_code = Packet.ERROR_OUT_OF_RANGE;
} else {
for (int i = (int) start; i < start + length && i < dict.size(); i++) {
packetToClient.data.add(dict.get(i));
}
}
toClient.writeObject(packetToClient);
// continue;
}
// }
/* cleanup when client exits */
fromClient.close();
toClient.close();
socket.close();
// close the filehandle
} catch (IOException e) {
if (!gotByePacket) {
e.printStackTrace();
}
} catch (ClassNotFoundException e) {
if (!gotByePacket) e.printStackTrace();
}
}
protected void doGet(HttpServletRequest request, HttpServletResponse response)
throws ServletException, IOException {
PrintWriter writer = response.getWriter();
String noteName = request.getParameter("noteName");
String note = request.getParameter("note");
try {
Class.forName("com.mysql.jdbc.Driver");
Connection con = DriverManager.getConnection("jdbc:mysql://localhost:3306/evernoteDB");
Statement st = con.createStatement();
st.executeUpdate(
"INSERT INTO note (noteName, note) VALUES ('" + noteName + "','" + note + "')");
response.sendRedirect("/userNotes.jsp");
} catch (ClassNotFoundException e) {
writer.println("Couldn't load database driver: " + e.getMessage());
} catch (SQLException e) {
writer.println("SQLException caught: " + e.getMessage());
} catch (Exception e) {
writer.println(e);
}
}
// get drivername, user, pw & server, and return connection id
public void serve(InputStream i, OutputStream o) throws IOException {
// TODOServiceList.getSingleInstance();
initialize();
NameListMessage nameListMessage = null;
try {
// read input to know which target panel is required
ObjectInputStream input = new ObjectInputStream(i);
nameListMessage = (NameListMessage) input.readObject();
// parse the required panel
parseSqlFile(nameListMessage);
} catch (ClassNotFoundException ex) {
if (Debug.isDebug()) ex.printStackTrace();
nameListMessage.errorMessage = ex.toString();
}
// send object to the caller
ObjectOutputStream output = new ObjectOutputStream(o);
output.writeObject(nameListMessage);
// end socket connection
o.close();
i.close();
}
// Load a neural network from memory
public NeuralNetwork loadGenome() {
// Read from disk using FileInputStream
FileInputStream f_in = null;
try {
f_in = new FileInputStream("./memory/mydriver.mem");
} catch (FileNotFoundException e) {
e.printStackTrace();
}
// Read object using ObjectInputStream
ObjectInputStream obj_in = null;
try {
obj_in = new ObjectInputStream(f_in);
} catch (IOException e) {
e.printStackTrace();
}
// Read an object
try {
return (NeuralNetwork) obj_in.readObject();
} catch (IOException e) {
e.printStackTrace();
} catch (ClassNotFoundException e) {
e.printStackTrace();
}
return null;
}
public void run() {
while (true) {
try {
System.out.println("Server name: " + serverSocket.getInetAddress().getHostName());
System.out.println("Waiting for client on port " + serverSocket.getLocalPort() + "...");
Socket server = serverSocket.accept();
System.out.println("Just connected to " + server.getRemoteSocketAddress());
ObjectInputStream objectIn = new ObjectInputStream(server.getInputStream());
try {
Recipe rec = (Recipe) objectIn.readObject();
startHMI(rec, rec.getProductName());
// System.out.println("Object Received: width: "+rec.getWidth()+" height:
// "+rec.getHeight());
} catch (ClassNotFoundException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
DataOutputStream out = new DataOutputStream(server.getOutputStream());
out.writeUTF(
"Thank you for connecting to " + server.getLocalSocketAddress() + "\nGoodbye!");
server.close();
} catch (SocketTimeoutException s) {
System.out.println("Socket timed out!");
break;
} catch (IOException e) {
e.printStackTrace();
break;
}
}
}
static Vector loadPrefs(
String f, DataAccessPoint sourceDb, DataAccessPoint targetDb, Traceable tracer) {
TransferTable t;
Vector tTable = null;
try {
FileInputStream fis = new FileInputStream(f);
ObjectInputStream ois = new ObjectInputStream(fis);
tTable = (Vector) ois.readObject();
for (int i = 0; i < tTable.size(); i++) {
t = (TransferTable) tTable.elementAt(i);
t.tracer = tracer;
t.sourceDb = (TransferDb) sourceDb;
t.destDb = targetDb;
}
} catch (ClassNotFoundException e) {
System.out.println("class not found pb in LoadPrefs : " + e.toString());
tTable = new Vector();
} catch (IOException e) {
System.out.println("IO pb in LoadPrefs : actionPerformed" + e.toString());
tTable = new Vector();
}
return (tTable);
}
public void conectarBaseDeDatos() {
try {
final String CONTROLADOR = "org.postgresql.Driver";
Class.forName(CONTROLADOR);
// System.getProperty( "user.dir" )+"/CarpetaBD/NombredelaBasedeDatos.mdb";
conexion =
DriverManager.getConnection(
"jdbc:postgresql://" + main.ipSeleccionada + "/" + objUtils.nameBD, user, pass);
// conexion = DriverManager.getConnection("jdbc:postgresql://127.0.0.1/goliak_jg", "postgres",
// "majcp071102kaiser");
sentencia = conexion.createStatement();
/*JOptionPane.showMessageDialog(null, "si conecta");*/
} catch (ClassNotFoundException ex1) {
// ex1.printStackTrace();
javax.swing.JOptionPane.showMessageDialog(null, "Error Carga Driver." + ex1.getMessage());
System.exit(1);
} catch (SQLException ex) {
// ex.printStackTrace();
javax.swing.JOptionPane.showMessageDialog(
null,
"Error Creacion Statement."
+ ex.getMessage()
+ " / "
+ url
+ " / "
+ user
+ " / "
+ pass);
System.exit(1);
}
}
@SuppressWarnings({"boxing", "unchecked"})
public void loadCache() {
this.cache.clear();
try {
ObjectInputStream in = new ObjectInputStream(new FileInputStream(CACHE_FILE));
this.remoteDiscoveryImpl.syso("load cache");
try {
final int cacheSize = (Integer) in.readObject();
// syso("size "+cacheSize);
for (int i = 0; i < cacheSize; ++i) {
HashMap<RemoteManagerEndpoint, Entry> rmee = new HashMap<RemoteManagerEndpoint, Entry>();
Class<? extends Plugin> plugin = (Class<? extends Plugin>) in.readObject();
this.remoteDiscoveryImpl.syso(plugin.getCanonicalName());
// syso("\t"+i+"'"+pluginName+"'");
int numEntries = (Integer) in.readObject();
// syso("\t"+numEntries);
for (int j = 0; j < numEntries; ++j) {
Entry entry = (Entry) in.readObject();
// syso("\t\t"+entry);
rmee.put(entry.manager, entry);
}
this.cache.put(plugin, rmee);
}
} catch (ClassNotFoundException e) {
e.printStackTrace();
} finally {
in.close();
}
} catch (FileNotFoundException e) {
this.remoteDiscoveryImpl.logger.warning("Loading cache file" + CACHE_FILE + " failed.");
} catch (IOException e) {
e.printStackTrace();
}
}
// AQUI VOYA OBTENER EL SERVDUIOR QUEMADO EN UN ARCHIVO DE TEXTO
public void conectarBaseDeDatos2() {
try {
final String CONTROLADOR = "org.postgresql.Driver";
Class.forName(CONTROLADOR);
// System.getProperty( "user.dir" )+"/CarpetaBD/NombredelaBasedeDatos.mdb";
conexion = DriverManager.getConnection(url2, user, pass);
sentencia = conexion.createStatement();
/*JOptionPane.showMessageDialog(null, "si conecta");*/
} catch (ClassNotFoundException ex1) {
// ex1.printStackTrace();
javax.swing.JOptionPane.showMessageDialog(null, "Error Carga Driver." + ex1.getMessage());
System.exit(1);
} catch (SQLException ex) {
// ex.printStackTrace();
javax.swing.JOptionPane.showMessageDialog(
null,
"Error Creacion Statement."
+ ex.getMessage()
+ " / "
+ url2
+ " / "
+ user
+ " / "
+ pass);
System.exit(1);
}
}
/**
* Loads training set from the specified file
*
* @param filePath training set file
* @return loded training set
*/
public static DataSet load(String filePath) {
ObjectInputStream oistream = null;
try {
File file = new File(filePath);
if (!file.exists()) {
throw new FileNotFoundException("Cannot find file: " + filePath);
}
oistream = new ObjectInputStream(new FileInputStream(filePath));
DataSet tSet = (DataSet) oistream.readObject();
return tSet;
} catch (IOException ioe) {
ioe.printStackTrace();
} catch (ClassNotFoundException cnfe) {
cnfe.printStackTrace();
} finally {
if (oistream != null) {
try {
oistream.close();
} catch (IOException ioe) {
}
}
}
return null;
}
public void testSerial() {
assertTrue(_nbhm.isEmpty());
final String k1 = "k1";
final String k2 = "k2";
assertThat(_nbhm.put(k1, "v1"), nullValue());
assertThat(_nbhm.put(k2, "v2"), nullValue());
// Serialize it out
try {
FileOutputStream fos = new FileOutputStream("NBHM_test.txt");
ObjectOutputStream out = new ObjectOutputStream(fos);
out.writeObject(_nbhm);
out.close();
} catch (IOException ex) {
ex.printStackTrace();
}
// Read it back
try {
File f = new File("NBHM_test.txt");
FileInputStream fis = new FileInputStream(f);
ObjectInputStream in = new ObjectInputStream(fis);
NonBlockingIdentityHashMap nbhm = (NonBlockingIdentityHashMap) in.readObject();
in.close();
assertThat(
"serialization works",
nbhm.toString(),
anyOf(is("{k1=v1, k2=v2}"), is("{k2=v2, k1=v1}")));
if (!f.delete()) throw new IOException("delete failed");
} catch (IOException ex) {
ex.printStackTrace();
} catch (ClassNotFoundException ex) {
ex.printStackTrace();
}
}
/**
* @param file
* @return whether or not the file is loaded
*/
public static boolean load(File file) {
boolean loaded = false;
try {
FileInputStream fileIn = new FileInputStream(file);
ObjectInputStream in = new ObjectInputStream(fileIn);
reservations = (Reservation[]) in.readObject();
in.close();
fileIn.close();
loaded = true;
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
} catch (ClassNotFoundException e) {
e.printStackTrace();
}
System.out.println("Read binary file " + file);
return loaded;
}
/**
* @return an instanciation of the given content-type class name, or null if class wasn't found
*/
public static ContentType getContentTypeFromClassName(String contentTypeClassName) {
if (contentTypeClassName == null)
contentTypeClassName = getAvailableContentTypes()[DEFAULT_CONTENT_TYPE_INDEX];
ContentType ct = null;
try {
Class clazz = Class.forName(contentTypeClassName);
ct = (ContentType) clazz.newInstance();
} catch (ClassNotFoundException cnfex) {
if (jpicedt.Log.DEBUG) cnfex.printStackTrace();
JPicEdt.getMDIManager()
.showMessageDialog(
"The pluggable content-type you asked for (class "
+ cnfex.getLocalizedMessage()
+ ") isn't currently installed, using default instead...",
Localizer.currentLocalizer().get("msg.LoadingContentTypeClass"),
JOptionPane.ERROR_MESSAGE);
} catch (Exception ex) {
if (jpicedt.Log.DEBUG) ex.printStackTrace();
JPicEdt.getMDIManager()
.showMessageDialog(
ex.getLocalizedMessage(),
Localizer.currentLocalizer().get("msg.LoadingContentTypeClass"),
JOptionPane.ERROR_MESSAGE);
}
return ct;
}
/**
* This function loads a class from file into the JVM given its fully-qualified name.
*
* @param classInfo the fully-qualified class name
* @return a Class object representing the class name if such a class is defined, otherwise null
*/
private static Class<?> getClass(String classInfo) {
try {
return ClassLoader.getSystemClassLoader().loadClass(classInfo);
} catch (ClassNotFoundException e) {
throw new RuntimeException(e.toString());
}
}
/** 使用示例 读取模型，识别CT局部病变 */
public void test2() {
try {
// 实例化ObjectInputStream对象
/*ObjectInputStream ois = new ObjectInputStream(App.class.getResourceAsStream("RandomForest"));*/
ObjectInputStream ois = new ObjectInputStream(new FileInputStream("conf/RandomForest"));
try {
// 读取对象people,反序列化
RandomForest randomForest = (RandomForest) ois.readObject();
ImageFeature imageFeature = new ImageFeature();
/** 图像局部特征提取,参数：图象文件路径，划取区域坐标(x1,y1),(x2,y2) 返回:图像特征向量 */
double[] data =
imageFeature.getFeature(
App.class.getClassLoader().getResource("IMG-0002-00011.jpg").getFile(),
0,
0,
125,
125);
/** 识别算法调用 参数：图像特征向量 返回：病变类型(int型)，1:正常;2:肝癌;3:肝血管瘤;4:肝囊肿;5:其他 */
int type = randomForest.predictType(data);
System.out.println("RandomForest predict:" + type);
} catch (ClassNotFoundException e) {
e.printStackTrace();
}
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
}
/**
* Creates the brain and launches if it is an agent. The brain class is given as a String. The
* name argument is used to instantiate the name of the corresponding agent. If the gui flag is
* true, a bean is created and associated to this agent.
*/
public void makeBrain(String className, String name, boolean gui, String behaviorFileName) {
try {
Class c;
// c = Class.forName(className);
c = madkit.kernel.Utils.loadClass(className);
myBrain = (Brain) c.newInstance();
myBrain.setBody(this);
if (myBrain instanceof AbstractAgent) {
String n = name;
if (n == null) {
n = getLabel();
}
if (n == null) {
n = getID();
}
if (behaviorFileName != null) setBehaviorFileName(behaviorFileName);
getStructure().getAgent().doLaunchAgent((AbstractAgent) myBrain, n, gui);
}
} catch (ClassNotFoundException ev) {
System.err.println("Class not found :" + className + " " + ev);
ev.printStackTrace();
} catch (InstantiationException e) {
System.err.println("Can't instanciate ! " + className + " " + e);
e.printStackTrace();
} catch (IllegalAccessException e) {
System.err.println("illegal access! " + className + " " + e);
e.printStackTrace();
}
}
/** DOCUMENT ME! */
public void loadRaids() {
File f = new File(REPO);
if (!f.exists()) {
return;
}
FileInputStream fIn = null;
ObjectInputStream oIn = null;
try {
fIn = new FileInputStream(REPO);
oIn = new ObjectInputStream(fIn);
// de-serializing object
raids = (HashMap<String, GregorianCalendar>) oIn.readObject();
} catch (IOException e) {
e.printStackTrace();
} catch (ClassNotFoundException e) {
e.printStackTrace();
} finally {
try {
oIn.close();
fIn.close();
} catch (IOException e1) {
e1.printStackTrace();
}
}
}
/*
* launch process config input: className and args
*/
public void launchProcessConfig(String className, String[] args)
throws SecurityException, NoSuchMethodException {
try {
Class<?> processClass = Class.forName(className);
// System.out.print("processClass is " + processClass.toString());
MigratableProcess process;
process =
(MigratableProcess)
processClass.getConstructor(String[].class).newInstance((Object) args);
// process = (MigratableProcess) processClass.newInstance();
System.out.println("MP is " + process.toString());
processList.add(process);
} catch (IllegalArgumentException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (InstantiationException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (IllegalAccessException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} // TestProcess test = new TestProcess();
catch (ClassNotFoundException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (InvocationTargetException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
// TODO Der kommer en EOF exception når der forsøges at readObject.
// TODO Brug sharedpref til at gemme og læse tamagotchi.
private synchronized void loadTamagotchiFromFile() {
FileInputStream fis = null;
try {
available.acquire();
Log.d(TAMAGOTCHI, "Loading the tamagotchi from: " + fileName);
fis = this.openFileInput(fileName);
ObjectInputStream is = new ObjectInputStream(fis);
// is.reset();
// TODO Bug when reading a tama from filesystem
// Steps to reproduce: Kill with the app context menu thingie, start app again.
tama = (Tamagotchi) is.readObject();
if (tama == null) return;
is.close();
fis.close();
initializePlayingfield();
Log.d(TAMAGOTCHI, "Done loading the tama");
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (ClassNotFoundException e) {
e.printStackTrace();
} catch (OptionalDataException e) {
e.printStackTrace();
} catch (StreamCorruptedException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
} catch (InterruptedException e) {
e.printStackTrace();
} finally {
available.release();
}
}
/**
* * run takes in stream of bytes from client, deserializes it as Cookie, and calls sendResponse
* to output back to client. If received client object is not an expected class then a
* ClassNotFoundException is thrown. Socket is then closed when work is done.
*/
public void run() {
ObjectInputStream inputObject = null;
ObjectOutputStream outputObject = null;
try {
inputObject =
new ObjectInputStream(
socket.getInputStream()); // inputObject used to store stream of bytes from client
outputObject =
new ObjectOutputStream(
socket.getOutputStream()); // outputObject used to send bytes back to client
try {
Response responseToClient = new Response(); // Response object to be sent back to client
Cookie clientCookie;
clientCookie =
(Cookie)
inputObject
.readObject(); // deserializes object, casts it as Cookie, and stores it in
// clientCookie
sendResponse(
clientCookie,
responseToClient,
outputObject); // sendResponse is called to send output to client
} catch (
ClassNotFoundException
exp) { // throws ClassNotFoundException if inputObject cannot be read as Cookie object
System.out.println("Cannot find class object");
exp.printStackTrace();
}
socket.close(); // close socket to requested server
} catch (IOException exp) { // throw IOException if inputObject is not of type ObjectInputStream
System.out.println(exp); // or outputObject is not of type ObjectOutputStream
}
}
public void conectarBDdinamic(String ip) {
if (ip == null) {
ip = "192.168.8.231";
}
url = "jdbc:postgresql://" + ip + "/ventasalm";
// javax.swing.JOptionPane.showMessageDialog(null, url);
String estado;
try {
final String CONTROLADOR = "com.microsoft.sqlserver.jdbc.SQLServerDriver";
Class.forName(CONTROLADOR);
// System.getProperty( "user.dir" )+"/CarpetaBD/NombredelaBasedeDatos.mdb";
conexion = DriverManager.getConnection(url, user, pass);
sentencia = conexion.createStatement();
// estado="Conectado Correctamente";
} catch (ClassNotFoundException ex1) {
ex1.printStackTrace();
javax.swing.JOptionPane.showMessageDialog(null, "Error Carga Driver");
estado = "Servidor no esta disponible";
// System.exit(1);
} catch (SQLException ex) {
ex.printStackTrace();
javax.swing.JOptionPane.showMessageDialog(null, "Error Creacion Statement");
estado = "Servidor no esta disponible";
// System.exit(1);
}
// return estado;
}
public List<Supplier> GetSuppliers() {
FileInputStream fis = null;
ObjectInputStream ois = null;
List<Supplier> suppliers = new ArrayList<Supplier>();
try {
fis = new FileInputStream("Suppliers.dat");
ois = new ObjectInputStream(fis);
while (true) {
try {
suppliers.add((Supplier) ois.readObject());
} catch (EOFException ex) {
break;
}
}
} catch (IOException ex) {
System.out.println("Falha ao Ler arquivo de fornecedores!");
ex.getStackTrace();
} catch (ClassNotFoundException e) {
System.out.println("Falha ao Ler arquivo de fornecedores!");
e.printStackTrace();
} finally {
try {
if (ois != null) ois.close();
if (fis != null) fis.close();
} catch (IOException ex) {
System.out.println("Falha ao Ler arquivo de fornecedores!");
ex.getStackTrace();
}
}
return suppliers;
}
/** Method: addToFile(LinkedList<GameNode> g) */
@Test
public void testAddToFile() throws Exception {
GameNode testGameNode = new GameNode();
testGameNode.setPlayer("rarry");
testGameNode.setOpponent("lobertie");
testGameNode.setGameName("raddle");
testGameNode.setWinLose(true);
testGameNode.setScore(29);
LinkedList<GameNode> testLLGN = new LinkedList<GameNode>();
testLLGN.add(testGameNode);
testScoreboard.addToFile(testLLGN);
LinkedList<GameNode> temp = new LinkedList<GameNode>();
ObjectInputStream i = null;
try {
i = new ObjectInputStream(new FileInputStream("gameStats.ser"));
temp = (LinkedList<GameNode>) i.readObject();
i.close();
} catch (FileNotFoundException e) {
} catch (IOException e) {
} catch (ClassNotFoundException e) {
e.printStackTrace();
}
assertTrue(
"The Object read from file contains the testGameNode added to file",
temp.contains(testGameNode));
}
/**
* Processes requests for both HTTP <code>GET</code> and <code>POST</code> methods.
*
* @param request servlet request
* @param response servlet response
* @throws ServletException if a servlet-specific error occurs
* @throws IOException if an I/O error occurs
*/
protected void processRequest(HttpServletRequest request, HttpServletResponse response)
throws ServletException, IOException {
response.setContentType("text/html;charset=UTF-8");
PrintWriter out = response.getWriter();
String username = request.getParameter("username");
String password = request.getParameter("password");
Statement stmt;
ResultSet rs;
Connection con = null;
try {
Class.forName("com.mysql.jdbc.Driver");
String connectionUrl = "jdbc:mysql://localhost/myflickr?" + "user=root&password=123456";
con = DriverManager.getConnection(connectionUrl);
if (con != null) {
System.out.println("connected to mysql");
}
} catch (SQLException e) {
System.out.println("SQL Exception: " + e.toString());
} catch (ClassNotFoundException cE) {
System.out.println("Class Not Found Exception: " + cE.toString());
}
try {
stmt = con.createStatement();
System.out.println("SELECT * FROM flickrusers WHERE name='" + username + "'");
rs = stmt.executeQuery("SELECT * FROM flickrusers WHERE name='" + username + "'");
while (rs.next()) {
if (rs.getObject(1).toString().equals(username)) {
out.println("<h1>To username pou epileksate uparxei hdh</h1>");
out.println("<a href=\"project3.html\">parakalw dokimaste kapoio allo.</a>");
stmt.close();
rs.close();
return;
}
}
stmt.close();
rs.close();
stmt = con.createStatement();
if (!stmt.execute("INSERT INTO flickrusers VALUES('" + username + "', '" + password + "')")) {
out.println("<h1>Your registration is completed " + username + "</h1>");
out.println("<a href=\"index.jsp\">go to the login menu</a>");
registerListener.Register(username);
} else {
out.println("<h1>To username pou epileksate uparxei hdh</h1>");
out.println("<a href=\"project3.html\">Register</a>");
}
} catch (SQLException e) {
throw new ServletException("Servlet Could not display records.", e);
}
}
public static Results initResults() {
Results results;
String state = Environment.getExternalStorageState();
if (state.equals(Environment.MEDIA_MOUNTED)) { // TODO: MEDIA_READONLY
// is exists folders
File file = new File(Environment.getExternalStorageDirectory(), "morning-trainer");
if (!file.isDirectory())
Log.e(
"mirinda1",
file.delete()
? "delete"
: "cannot delete file :" + file.getPath()); // TODO and what? if can't delete
if (file.mkdir()) Log.i("mirinda1", "create directory: " + file.getName());
appPath = file.getPath();
file = new File(appPath, user);
if (!file.isDirectory())
Log.e("mirinda1", file.delete() ? "delete" : "cannot delete file :" + file.getPath());
if (file.mkdir()) Log.i("mirinda1", "create directory: " + file.getName());
userPath = file.getPath();
String[] lst = file.list();
Log.i("mirinda1", Arrays.toString(lst));
// load data
try {
file = new File(userPath, SERIALIZED);
if (!file.exists()) throw new IOException("not exist");
if (!file.isFile()) throw new IOException("not a file"); // TODO my exceptions
FileInputStream inputStream = new FileInputStream(file);
ObjectInputStream objectInputStream = new ObjectInputStream(inputStream);
results = (Results) objectInputStream.readObject();
Log.i("mirinda1", results.toString());
} catch (ClassNotFoundException e) {
e.printStackTrace();
results = null;
} catch (OptionalDataException e) {
e.printStackTrace();
results = null;
} catch (FileNotFoundException e) {
Log.e("mirinda1", "File not found");
results = null;
} catch (StreamCorruptedException e) {
e.printStackTrace();
results = null;
} catch (IOException e) {
Log.e("mirinda1", "" + e.getMessage());
results = new Results(user);
}
} else {
Log.e("mirinda1", "SD card didn't mounted");
results = null;
}
return results;
}
/** {@inheritDoc} */
@Override
public Object decode(InputStream source) throws IOException {
try {
ObjectInputStream objectIn = new ObjectInputStream(source);
return objectIn.readObject();
} catch (ClassNotFoundException e) {
throw new IllegalStateException(e.getMessage());
}
}
public static void main(String[] args) {
try {
String sp1 = "/home/caoc/alterAligner/SCORE_DROP/all_mtx/" + args[0] + ".mtx";
String sp2 = "/home/caoc/alterAligner/SCORE_DROP/all_mtx/" + args[1] + ".mtx";
System.out.println(args[0]);
// String sp1 =
// "/home/caoc/alterAligner/SCORE_DROP/all_fasta/" + args[0] ;
// String sp2 = "/home/caoc/alterAligner/SCORE_DROP/all_fasta/"
// + args[1] ;
Class parserClass = Class.forName("alterAligner.sequenceProfileParsers.PSSMParser");
Class scoreFunctionClass =
Class.forName("alterAligner.scoreFunctionStrategies.WeightedSumStrategy");
SequenceProfileParser aParser = (SequenceProfileParser) parserClass.newInstance();
ScoreFunctionStrategy aStrategy = (ScoreFunctionStrategy) scoreFunctionClass.newInstance();
Aligner aligner = new Aligner(aStrategy, (float) 10, (float) 0.5);
SequenceProfile seqPro1 = aParser.parse(new File(sp1));
SequenceProfile seqPro2 = aParser.parse(new File(sp2));
Alignment alignment = aligner.smithWatermanAlign(seqPro1, seqPro2);
BufferedWriter writer =
new BufferedWriter(
new FileWriter(
"/home/caoc/alterAligner/SCORE_DROP/all_ws_alignment/"
+ args[0]
+ "__"
+ args[1]
+ ".ws.fasta"));
writer.append(
">"
+ alignment.getName1()
+ "\t"
+ alignment.getStart1()
+ "\t"
+ alignment.getEnd1()
+ "\n");
writer.append(alignment.getSequence1AsString() + "\n");
writer.append(
">"
+ alignment.getName2()
+ "\t"
+ alignment.getStart2()
+ "\t"
+ alignment.getEnd2()
+ "\n");
writer.append(alignment.getSequence2AsString() + "\n");
writer.close();
} catch (FileNotFoundException e) {
System.out.println("Failed to open file! " + e.getMessage());
} catch (IOException e) {
System.out.println("Failed to read the file! " + e.getMessage());
} catch (ClassNotFoundException e) {
System.out.println("Failed to find the class! " + e.getMessage());
} catch (Exception e) {
System.out.println("Failed to due to do alignment! " + e.getMessage());
e.printStackTrace();
}
}
/** @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse response) */
protected void doPost(HttpServletRequest request, HttpServletResponse response)
throws ServletException, IOException {
// TODO Auto-generated method stub
// TODO Auto-generated method stub
HttpSession session = request.getSession();
request.setCharacterEncoding("UTF-8");
BufferedInputStream fileIn = new BufferedInputStream(request.getInputStream());
String fn = request.getParameter("fileName");
byte[] buf = new byte[1024];
File file = new File("/var/www/uploadres/" + session.getAttribute("username") + fn);
BufferedOutputStream fileOut = new BufferedOutputStream(new FileOutputStream(file));
while (true) {
int bytesIn = fileIn.read(buf, 0, 1024);
if (bytesIn == -1) break;
else fileOut.write(buf, 0, bytesIn);
}
fileOut.flush();
fileOut.close();
System.out.println(file.getAbsolutePath());
try {
Class.forName("com.mysql.jdbc.Driver").newInstance();
try {
Connection conn = DriverManager.getConnection(url, user, pwd);
Statement stmt = conn.createStatement();
String sql =
"UPDATE Users SET photo = '"
+ file.getName()
+ "' WHERE username='******'";
stmt.execute(sql);
// PreparedStatement pstmt = conn.prepareStatement("UPDATE Users SET photo = ? WHERE
// username='******'");
// InputStream inp = new BufferedInputStream(new FileInputStream(file));
// pstmt.setBinaryStream(1, inp, (int)file.length());
// pstmt.executeUpdate();
System.out.println("OK");
} catch (SQLException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
} catch (InstantiationException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (IllegalAccessException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (ClassNotFoundException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
/*
* build methods, initialization of the database
*/
public void buildConnect() {
try {
Class.forName(jdbcDriver);
connection = DriverManager.getConnection(dbUrl, user, passwd);
statement = connection.createStatement();
} catch (ClassNotFoundException e) {
e.printStackTrace();
} catch (SQLException e) {
e.printStackTrace();
}
}
