/** This closes the IGV window. */
public static void stopGUI() {
if (!IGV.hasInstance()) {
return;
}
IGV.getMainFrame().setVisible(false);
IGV.getMainFrame().dispose();
IGV.destroyInstance();
}
@Before
public void setUp() throws Exception {
igv.newSession();
IGV.getMainFrame().requestFocus();
TestUtils.resetPrefsFile();
TestUtils.resetTestUserDefinedGenomes();
IGV.getInstance().getContentPane().getCommandBar().refreshGenomeListComboBox();
}
public final void doExitApplication() {
try {
IGV.getInstance().saveStateForExit();
Frame mainFrame = IGV.getMainFrame();
// Hide and close the application
mainFrame.setVisible(false);
mainFrame.dispose();
} finally {
System.exit(0);
}
}
/**
* Load a gui with the specified genome file. No genome is loaded if null
*
* @param genomeFile
* @return
* @throws IOException
*/
protected static IGV startGUI(String genomeFile) throws IOException {
Globals.setHeadless(false);
IGV igv;
// If IGV is already open, we get the instance.
if (IGV.hasInstance()) {
igv = IGV.getInstance();
IGV.getMainFrame().setVisible(true);
System.out.println("Using old IGV");
} else {
JFrame frame = new JFrame();
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
Main.open(frame);
System.out.println("Started new IGV");
igv = IGV.getInstance();
assertTrue(IGV.getInstance().waitForNotify(1000));
}
if (genomeFile != null) {
igv.loadGenome(genomeFile, null);
genome = igv.getGenomeManager().getCurrentGenome();
}
return igv;
}
public void showAboutDialog() {
(new AboutDialog(IGV.getMainFrame(), true)).setVisible(true);
}