/** {@inheritDoc} */
protected void setGUIFromParams() {
image = scriptParameters.retrieveInputImage();
userInterface = ViewUserInterface.getReference();
parentFrame = image.getParentFrame();
if (scriptParameters.doOutputNewImage()) {
setDisplayLocNew();
} else {
setDisplayLocReplace();
}
searchWindowSide = scriptParameters.getParams().getInt("search_window_side");
similarityWindowSide = scriptParameters.getParams().getInt("similarity_window_side");
noiseStandardDeviation = scriptParameters.getParams().getFloat("noise_standard_deviation");
degreeOfFiltering = scriptParameters.getParams().getFloat("degree_of_filtering");
doRician = scriptParameters.getParams().getBoolean("do_rician");
image25D = scriptParameters.doProcess3DAs25D();
}
/** {@inheritDoc} */
protected void setGUIFromParams() {
image = scriptParameters.retrieveInputImage(1);
userInterface = ViewUserInterface.getReference();
parentFrame = image.getParentFrame();
if (scriptParameters.doOutputNewImage()) {
setDisplayLocNew();
} else {
// replace processing not supported..
// setDisplayLocReplace();
setDisplayLocNew();
}
subXDim = scriptParameters.getParams().getInt("sub_x_dim");
subYDim = scriptParameters.getParams().getInt("sub_y_dim");
numberOfImagesInMosaic = scriptParameters.getParams().getInt("number_of_images_in_mosaic");
}
/** {@inheritDoc} */
protected void setGUIFromParams() {
image = scriptParameters.retrieveInputImage();
parentFrame = image.getParentFrame();
if (!image.isColorImage()) {
throw new ParameterException(
AlgorithmParameters.getInputImageLabel(1), "Source Image must be Color");
}
setBlueMin(scriptParameters.getParams().getInt("blue_min"));
setRedMin(scriptParameters.getParams().getInt("red_min"));
setRedFraction(scriptParameters.getParams().getFloat("red_fraction"));
setMergingDistance(scriptParameters.getParams().getFloat("merging_distance"));
setGreenMin(scriptParameters.getParams().getInt("green_min"));
setGreenFraction(scriptParameters.getParams().getFloat("green_fraction"));
setGreenRegionNumber(scriptParameters.getParams().getInt("green_region_number"));
setTwoGreenLevels(scriptParameters.getParams().getBoolean("two_green_levels"));
setBlueBoundaryFraction(scriptParameters.getParams().getFloat("blue_boundary_fraction"));
setBlueSmooth(scriptParameters.getParams().getBoolean("blue_smooth"));
setInterpolationDivisor(scriptParameters.getParams().getFloat("interpolation_divisor"));
}
/**
* This method is required if the AlgorithmPerformed interface is implemented. It is called by the
* algorithms when it has completed or failed to to complete, so that the dialog can be display
* the result image and/or clean up.
*
* @param algorithm Algorithm that caused the event.
*/
public void algorithmPerformed(AlgorithmBase algorithm) {
ViewJFrameImage imageFrame = null;
if (algorithm instanceof AlgorithmMosaicToSlices) {
if ((mathAlgo.isCompleted() == true) && (mathAlgo.getResultImage() != null)) {
// The algorithm has completed and produced a new image to be displayed.
if (displayLoc == NEW) {
try {
resultImage = mathAlgo.getResultImage();
new ViewJFrameImage(resultImage, null, new Dimension(610, 200));
} catch (OutOfMemoryError error) {
System.gc();
MipavUtil.displayError("Out of memory: unable to open new frame");
}
} else {
// These next lines set the titles in all frames where the source image is displayed to
// image name so as to indicate that the image is now unlocked!
// The image frames are enabled and then registed to the userinterface.
resultImage = mathAlgo.getResultImage();
Vector<ViewImageUpdateInterface> imageFrames = image.getImageFrameVector();
for (int i = 0; i < imageFrames.size(); i++) {
((Frame) (imageFrames.elementAt(i))).setTitle(titles[i]);
((Frame) (imageFrames.elementAt(i))).setEnabled(true);
if ((((Frame) (imageFrames.elementAt(i))) != parentFrame) && (parentFrame != null)) {
userInterface.registerFrame((Frame) (imageFrames.elementAt(i)));
}
}
Point pt;
if (parentFrame != null) {
pt = ((ViewJFrameBase) parentFrame).getLocation();
} else {
pt =
new Point(
Toolkit.getDefaultToolkit().getScreenSize().width / 2,
Toolkit.getDefaultToolkit().getScreenSize().height / 2);
}
imageFrame = new ViewJFrameImage(resultImage, null, new Dimension(pt.x, pt.y));
if (parentFrame != null) {
((ViewJFrameBase) parentFrame).close();
} else {
((ViewJFrameBase) image.getParentFrame()).close();
}
// Not so sure about this.
if (image.getLightBoxFrame() != null) {
try {
pt = image.getLightBoxFrame().getLocation();
image.getLightBoxFrame().close();
new ViewJFrameLightBox(
imageFrame,
"LightBox",
resultImage,
imageFrame.getComponentImage().getLUTa(),
imageFrame.getComponentImage().getImageB(),
imageFrame.getComponentImage().getLUTb(),
imageFrame.getComponentImage().getResolutionX(),
imageFrame.getComponentImage().getResolutionY(),
new Dimension(pt.x, pt.y),
imageFrame.getControls(),
imageFrame.getVOIManager());
} catch (OutOfMemoryError error) {
MipavUtil.displayError("Out of memory: unable to open new frame");
}
}
}
} else if (resultImage == null) {
// These next lines set the titles in all frames where the source image is displayed to
// image name so as to indicate that the image is now unlocked!
// The image frames are enabled and then registered to the userinterface.
/*Vector imageFrames = imageA.getImageFrameVector();
for (int i = 0; i < imageFrames.size(); i++) {
((Frame) (imageFrames.elementAt(i))).setTitle(titles[i]);
((Frame) (imageFrames.elementAt(i))).setEnabled(true);
if (((Frame) (imageFrames.elementAt(i))) != parentFrame) {
userInterface.registerFrame((Frame) (imageFrames.elementAt(i)));
}
}*/
if (parentFrame != null) {
userInterface.registerFrame(parentFrame);
}
image.notifyImageDisplayListeners(null, true);
} else if (resultImage != null) {
// algorithm failed but result image still has garbage
resultImage.disposeLocal(); // clean up memory
System.gc();
}
}
if (algorithm.isCompleted()) {
insertScriptLine();
}
mathAlgo.finalize();
mathAlgo = null;
dispose();
}