public void applyAction(ActionEvent evt) {
if (FormatProperties.contains(getArg("format"))) {
fireStatusEvent("Formatting...");
String outStr =
FormatAdapter.get(getArg("format").toUpperCase(), av.getAlignment().getSequences());
ta.setText(outStr);
fireStatusEvent("done");
} else {
fireStatusEvent("Not yet supported", StatusEvent.ERROR);
}
}
public void applyAction(ActionEvent evt) {
String fileStr = getArg("file");
System.out.println("Output string " + fileStr);
if (FormatProperties.contains(getArg("format"))) {
if (parent instanceof AlignFrame) {
AlignFrame af = (AlignFrame) parent;
String outStr =
FormatAdapter.get(getArg("format").toUpperCase(), av.getAlignment().getSequences());
System.out.println(outStr + " " + fileStr);
try {
PrintStream ps =
new PrintStream(new BufferedOutputStream(new FileOutputStream(fileStr)));
fireStatusEvent("Saving file");
try {
Thread.sleep(500);
} catch (Exception ex2) {
}
ps.print(outStr);
ps.close();
fireStatusEvent("done");
fireJalActionEvent(new JalActionEvent(this, this, JalActionEvent.DONE));
} catch (IOException ex) {
fireStatusEvent("Can't open file", StatusEvent.ERROR);
System.out.println("Exception : " + ex);
}
} else {
fireStatusEvent("(Internal Error) Parent isn't Alignment Frame", StatusEvent.ERROR);
}
} else {
fireStatusEvent("Format not yet supported", StatusEvent.ERROR);
}
}
