public static ims.oncology.configuration.domain.objects.TumourGroup extractTumourGroup(
ims.domain.ILightweightDomainFactory domainFactory,
ims.clinicaladmin.vo.TumourGroupListForPrimaryTumourDetailsVo valueObject,
HashMap domMap) {
if (null == valueObject) {
return null;
}
Integer id = valueObject.getID_TumourGroup();
ims.oncology.configuration.domain.objects.TumourGroup domainObject = null;
if (null == id) {
if (domMap.get(valueObject) != null) {
return (ims.oncology.configuration.domain.objects.TumourGroup) domMap.get(valueObject);
}
// ims.clinicaladmin.vo.TumourGroupListForPrimaryTumourDetailsVo ID_TumourGroup field is
// unknown
domainObject = new ims.oncology.configuration.domain.objects.TumourGroup();
domMap.put(valueObject, domainObject);
} else {
String key = (valueObject.getClass().getName() + "__" + valueObject.getID_TumourGroup());
if (domMap.get(key) != null) {
return (ims.oncology.configuration.domain.objects.TumourGroup) domMap.get(key);
}
domainObject =
(ims.oncology.configuration.domain.objects.TumourGroup)
domainFactory.getDomainObject(
ims.oncology.configuration.domain.objects.TumourGroup.class, id);
// TODO: Not sure how this should be handled. Effectively it must be a staleobject exception,
// but maybe should be handled as that further up.
if (domainObject == null) return null;
domMap.put(key, domainObject);
}
domainObject.setVersion(valueObject.getVersion_TumourGroup());
// This is to overcome a bug in both Sybase and Oracle which prevents them from storing an empty
// string correctly
// Sybase stores it as a single space, Oracle stores it as NULL. This fix will make them
// consistent at least.
if (valueObject.getGroupName() != null && valueObject.getGroupName().equals("")) {
valueObject.setGroupName(null);
}
domainObject.setGroupName(valueObject.getGroupName());
domainObject.setSites(
ims.clinicaladmin.vo.domain.TumourSiteLiteVoAssembler.extractTumourSiteList(
domainFactory, valueObject.getSites(), domainObject.getSites(), domMap));
domainObject.setTnmRequiresOver45(valueObject.getTnmRequiresOver45());
domainObject.setIsActive(valueObject.getIsActive());
domainObject.setTNMValues(
ims.clinicaladmin.vo.domain.TumourGroupSiteTNMValueListVoAssembler
.extractTumourGroupSiteTNMValueList(
domainFactory, valueObject.getTNMValues(), domainObject.getTNMValues(), domMap));
domainObject.setSerumMarkers(
ims.clinicaladmin.vo.domain.TumourSerumMarkersVoAssembler.extractTumourSerumMarkerSet(
domainFactory, valueObject.getSerumMarkers(), domainObject.getSerumMarkers(), domMap));
domainObject.setOtherClassifications(
ims.oncology.vo.domain.TumourGroupClassificationVoAssembler
.extractTumourGroupClassificationSet(
domainFactory,
valueObject.getOtherClassifications(),
domainObject.getOtherClassifications(),
domMap));
domainObject.setAssociatedSpecialties(
ims.oncology.vo.domain.TumourGroupSpecialtyVoAssembler.extractTumourGroupSpecialtySet(
domainFactory,
valueObject.getAssociatedSpecialties(),
domainObject.getAssociatedSpecialties(),
domMap));
domainObject.setHasTNM(valueObject.getHasTNM());
// SaveAsRefVO treated as RefValueObject
ims.oncology.configuration.vo.TumourGroupHistologyRefVoCollection refCollection10 =
new ims.oncology.configuration.vo.TumourGroupHistologyRefVoCollection();
if (valueObject.getHistologies() != null) {
for (int i10 = 0; i10 < valueObject.getHistologies().size(); i10++) {
ims.oncology.configuration.vo.TumourGroupHistologyRefVo ref10 =
(ims.oncology.configuration.vo.TumourGroupHistologyRefVo)
valueObject.getHistologies().get(i10);
refCollection10.add(ref10);
}
}
int size10 = (null == refCollection10) ? 0 : refCollection10.size();
java.util.List domainHistologies10 = domainObject.getHistologies();
if (domainHistologies10 == null) {
domainHistologies10 = new java.util.ArrayList();
}
for (int i = 0; i < size10; i++) {
ims.oncology.configuration.vo.TumourGroupHistologyRefVo vo = refCollection10.get(i);
ims.oncology.configuration.domain.objects.TumourGroupHistology dom = null;
if (null != vo) {
if (vo.getBoId() == null) {
if (domMap.get(vo) != null) {
dom = (ims.oncology.configuration.domain.objects.TumourGroupHistology) domMap.get(vo);
}
} else {
dom =
(ims.oncology.configuration.domain.objects.TumourGroupHistology)
domainFactory.getDomainObject(
ims.oncology.configuration.domain.objects.TumourGroupHistology.class,
vo.getBoId());
}
}
int domIdx = domainHistologies10.indexOf(dom);
if (domIdx == -1) {
domainHistologies10.add(i, dom);
} else if (i != domIdx && i < domainHistologies10.size()) {
Object tmp = domainHistologies10.get(i);
domainHistologies10.set(i, domainHistologies10.get(domIdx));
domainHistologies10.set(domIdx, tmp);
}
}
// Remove all ones in domList where index > voCollection.size() as these should
// now represent the ones removed from the VO collection. No longer referenced.
int i10 = domainHistologies10.size();
while (i10 > size10) {
domainHistologies10.remove(i10 - 1);
i10 = domainHistologies10.size();
}
domainObject.setHistologies(domainHistologies10);
domainObject.setHistopathologicGrades(
ims.clinicaladmin.vo.domain.TumourGroupHistopathologyGradeVoAssembler
.extractTumourGroupHistopathologicGradeSet(
domainFactory,
valueObject.getHistopathologicGrades(),
domainObject.getHistopathologicGrades(),
domMap));
ims.assessment.configuration.domain.objects.UserAssessment value12 = null;
if (null != valueObject.getAssessment()) {
if (valueObject.getAssessment().getBoId() == null) {
if (domMap.get(valueObject.getAssessment()) != null) {
value12 =
(ims.assessment.configuration.domain.objects.UserAssessment)
domMap.get(valueObject.getAssessment());
}
} else if (valueObject.getBoVersion()
== -1) // RefVo was not modified since obtained from the Assembler, no need to update the
// BO field
{
value12 = domainObject.getAssessment();
} else {
value12 =
(ims.assessment.configuration.domain.objects.UserAssessment)
domainFactory.getDomainObject(
ims.assessment.configuration.domain.objects.UserAssessment.class,
valueObject.getAssessment().getBoId());
}
}
domainObject.setAssessment(value12);
domainObject.setIsPrognosticGroupingRelevant(valueObject.getIsPrognosticGroupingRelevant());
// SaveAsRefVO - treated as a refVo in extract methods
ims.oncology.configuration.domain.objects.PrognosticGroupingConfig value14 = null;
if (null != valueObject.getPrognosticGroupingConfig()) {
if (valueObject.getPrognosticGroupingConfig().getBoId() == null) {
if (domMap.get(valueObject.getPrognosticGroupingConfig()) != null) {
value14 =
(ims.oncology.configuration.domain.objects.PrognosticGroupingConfig)
domMap.get(valueObject.getPrognosticGroupingConfig());
}
} else {
value14 =
(ims.oncology.configuration.domain.objects.PrognosticGroupingConfig)
domainFactory.getDomainObject(
ims.oncology.configuration.domain.objects.PrognosticGroupingConfig.class,
valueObject.getPrognosticGroupingConfig().getBoId());
}
}
domainObject.setPrognosticGroupingConfig(value14);
domainObject.setTnmRequiresDiff(valueObject.getTnmRequiresDiff());
domainObject.setTnmRequiresHisto(valueObject.getTnmRequiresHisto());
domainObject.setTnmRequiresSMarkers(valueObject.getTnmRequiresSMarkers());
return domainObject;
}
/**
* Update the ValueObject with the Domain Object.
*
* @param map DomainObjectMap of DomainObjects to already created ValueObjects.
* @param valueObject to be updated
* @param domainObject ims.oncology.configuration.domain.objects.TumourGroup
*/
public static ims.clinicaladmin.vo.TumourGroupListForPrimaryTumourDetailsVo insert(
DomainObjectMap map,
ims.clinicaladmin.vo.TumourGroupListForPrimaryTumourDetailsVo valueObject,
ims.oncology.configuration.domain.objects.TumourGroup domainObject) {
if (null == domainObject) {
return valueObject;
}
if (null == map) {
map = new DomainObjectMap();
}
valueObject.setID_TumourGroup(domainObject.getId());
valueObject.setIsRIE(domainObject.getIsRIE());
// If this is a recordedInError record, and the domainObject
// value isIncludeRecord has not been set, then we return null and
// not the value object
if (valueObject.getIsRIE() != null
&& valueObject.getIsRIE().booleanValue() == true
&& !domainObject.isIncludeRecord()) return null;
// If this is not a recordedInError record, and the domainObject
// value isIncludeRecord has been set, then we return null and
// not the value object
if ((valueObject.getIsRIE() == null || valueObject.getIsRIE().booleanValue() == false)
&& domainObject.isIncludeRecord()) return null;
// GroupName
valueObject.setGroupName(domainObject.getGroupName());
// Sites
valueObject.setSites(
ims.clinicaladmin.vo.domain.TumourSiteLiteVoAssembler
.createTumourSiteLiteVoCollectionFromTumourSite(map, domainObject.getSites()));
// TnmRequiresOver45
valueObject.setTnmRequiresOver45(domainObject.isTnmRequiresOver45());
// isActive
valueObject.setIsActive(domainObject.isIsActive());
// TNMValues
valueObject.setTNMValues(
ims.clinicaladmin.vo.domain.TumourGroupSiteTNMValueListVoAssembler
.createTumourGroupSiteTNMValueListVoCollectionFromTumourGroupSiteTNMValue(
map, domainObject.getTNMValues()));
// SerumMarkers
valueObject.setSerumMarkers(
ims.clinicaladmin.vo.domain.TumourSerumMarkersVoAssembler
.createTumourSerumMarkersVoCollectionFromTumourSerumMarker(
map, domainObject.getSerumMarkers()));
// OtherClassifications
valueObject.setOtherClassifications(
ims.oncology.vo.domain.TumourGroupClassificationVoAssembler
.createTumourGroupClassificationVoCollectionFromTumourGroupClassification(
map, domainObject.getOtherClassifications()));
// AssociatedSpecialties
valueObject.setAssociatedSpecialties(
ims.oncology.vo.domain.TumourGroupSpecialtyVoAssembler
.createTumourGroupSpecialtyVoCollectionFromTumourGroupSpecialty(
map, domainObject.getAssociatedSpecialties()));
// hasTNM
valueObject.setHasTNM(domainObject.isHasTNM());
// Histologies
valueObject.setHistologies(
ims.clinicaladmin.vo.domain.TumourGroupHistologyVoAssembler
.createTumourGroupHistologyVoCollectionFromTumourGroupHistology(
map, domainObject.getHistologies()));
// HistopathologicGrades
valueObject.setHistopathologicGrades(
ims.clinicaladmin.vo.domain.TumourGroupHistopathologyGradeVoAssembler
.createTumourGroupHistopathologyGradeVoCollectionFromTumourGroupHistopathologicGrade(
map, domainObject.getHistopathologicGrades()));
// Assessment
if (domainObject.getAssessment() != null) {
if (domainObject.getAssessment()
instanceof
HibernateProxy) // If the proxy is set, there is no need to lazy load, the proxy knows the
// id already.
{
HibernateProxy p = (HibernateProxy) domainObject.getAssessment();
int id = Integer.parseInt(p.getHibernateLazyInitializer().getIdentifier().toString());
valueObject.setAssessment(new ims.assessment.configuration.vo.UserAssessmentRefVo(id, -1));
} else {
valueObject.setAssessment(
new ims.assessment.configuration.vo.UserAssessmentRefVo(
domainObject.getAssessment().getId(), domainObject.getAssessment().getVersion()));
}
}
// isPrognosticGroupingRelevant
valueObject.setIsPrognosticGroupingRelevant(domainObject.isIsPrognosticGroupingRelevant());
// PrognosticGroupingConfig
valueObject.setPrognosticGroupingConfig(
ims.clinicaladmin.vo.domain.PrognosticGroupingCongfigVoAssembler.create(
map, domainObject.getPrognosticGroupingConfig()));
// TnmRequiresDiff
valueObject.setTnmRequiresDiff(domainObject.isTnmRequiresDiff());
// TnmRequiresHisto
valueObject.setTnmRequiresHisto(domainObject.isTnmRequiresHisto());
// TnmRequiresSMarkers
valueObject.setTnmRequiresSMarkers(domainObject.isTnmRequiresSMarkers());
return valueObject;
}