public static void main(final String... args) throws FileNotFoundException {
AAP_wStimulus aap = new AAP_wStimulus();
String path;
try {
path = "D:\\# Projects (Noam)\\# SLITE\\# DATA\\AAP 1.1.0\\"; // LAB
ImagePlus imp_test = IJ.openImage(path + "TEXT_20msON_10Hz_SLITE_2.tif");
if (imp_test == null) {
throw new FileNotFoundException("Your not in Lab....");
}
} catch (FileNotFoundException error) {
path =
"C:\\Users\\noambox\\Dropbox\\# Graduate studies M.Sc\\# SLITE\\ij - plugin data\\"; // HOME
}
aap.imp_r = IJ.openImage(path + "TEXT_20msON_10Hz_SLITE_2.tif"); // DEBUG
aap.imp_s = AVI_Reader.open(path + "OLEDstim_ON0.02_OFF9.98_FlashingText 21.avi", true);
aap.imp_r.show();
aap.imp_s.show();
String argv = "";
aap.run(argv);
}
/**
* Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image.
* Returns an ImagePlus object if successful. Modified by Gregory Jefferis to call
* HandleExtraFileTypes plugin if the file type is unrecognised.
*
* @see ij.IJ#openImage(String)
*/
public ImagePlus openImage(String directory, String name) {
ImagePlus imp;
FileOpener.setSilentMode(silentMode);
if (directory.length() > 0 && !(directory.endsWith("/") || directory.endsWith("\\")))
directory += Prefs.separator;
String path = directory + name;
fileType = getFileType(path);
if (IJ.debugMode) IJ.log("openImage: \"" + types[fileType] + "\", " + path);
switch (fileType) {
case TIFF:
imp = openTiff(directory, name);
return imp;
case DICOM:
imp = (ImagePlus) IJ.runPlugIn("ij.plugin.DICOM", path);
if (imp.getWidth() != 0) return imp;
else return null;
case TIFF_AND_DICOM:
// "hybrid" files created by GE-Senographe 2000 D */
imp = openTiff(directory, name);
ImagePlus imp2 = (ImagePlus) IJ.runPlugIn("ij.plugin.DICOM", path);
if (imp != null && imp2 != null) {
imp.setProperty("Info", imp2.getProperty("Info"));
imp.setCalibration(imp2.getCalibration());
}
if (imp == null) imp = imp2;
return imp;
case FITS:
imp = (ImagePlus) IJ.runPlugIn("ij.plugin.FITS_Reader", path);
if (imp.getWidth() != 0) return imp;
else return null;
case PGM:
imp = (ImagePlus) IJ.runPlugIn("ij.plugin.PGM_Reader", path);
if (imp.getWidth() != 0) {
if (imp.getStackSize() == 3 && imp.getBitDepth() == 16)
imp = new CompositeImage(imp, IJ.COMPOSITE);
return imp;
} else return null;
case JPEG:
imp = openJpegOrGif(directory, name);
if (imp != null && imp.getWidth() != 0) return imp;
else return null;
case GIF:
imp = (ImagePlus) IJ.runPlugIn("ij.plugin.GIF_Reader", path);
if (imp != null && imp.getWidth() != 0) return imp;
else return null;
case PNG:
imp = openUsingImageIO(directory + name);
if (imp != null && imp.getWidth() != 0) return imp;
else return null;
case BMP:
imp = (ImagePlus) IJ.runPlugIn("ij.plugin.BMP_Reader", path);
if (imp.getWidth() != 0) return imp;
else return null;
case ZIP:
return openZip(path);
case AVI:
AVI_Reader reader = new AVI_Reader();
reader.displayDialog(!IJ.macroRunning());
reader.run(path);
return reader.getImagePlus();
case UNKNOWN:
case TEXT:
// Call HandleExtraFileTypes plugin to see if it can handle unknown format
int[] wrap = new int[] {fileType};
imp = openWithHandleExtraFileTypes(path, wrap);
if (imp != null && imp.getNChannels() > 1) imp = new CompositeImage(imp, IJ.COLOR);
fileType = wrap[0];
if (imp == null && fileType == UNKNOWN && IJ.getInstance() == null)
IJ.error("Opener", "Unsupported format or not found");
return imp;
default:
return null;
}
}