/**
* Constructs a {@link VariableEntry} with retrieved values from the given patient and asserts
* that it contains the expected dynamic values.
*/
private void verifyRetrievedValue(
final Collection<? extends Variable> vars,
final Patient patient,
final Map<String, String> expectedValues) {
final VariableEntry actualVariableEntry = VariableEntry.withRetrievedValues(vars, patient);
assertEquals(expectedValues, actualVariableEntry.getDynamicValues());
}
/**
* A simplification of the above {@link #verifyRetrievedValue(Collection, Patient, Map)} to
* facilitate testing with a {@link RetrievedValue} object.
*/
private void verifyRetrievedValue(
final DiscreteNumericalVariable var,
final Patient patient,
final RetrievedValue retrievedValue) {
final Collection<DiscreteNumericalVariable> vars = ImmutableSet.of(var);
// Use VariableEntry to generate the expected dynamic values.
final VariableEntry expected =
new VariableEntry(vars)
.putRetrievedValue(VariableEntry.makeNumericalInputName(var.getKey()), retrievedValue);
verifyRetrievedValue(vars, patient, expected.getDynamicValues());
}
@Test
public final void testWithRetrievedLabs() {
final List<AbstractVariable> vars = new ArrayList<AbstractVariable>();
final Patient patient = SampleCalculations.dummyPatientWithLabs(1);
// Note that vars is empty at this point.
final VariableEntry expected = new VariableEntry(vars);
addAllLabs(expected, vars, patient);
final VariableEntry entry = VariableEntry.withRetrievedValues(vars, patient);
assertEquals(expected.getDynamicValues(), entry.getDynamicValues());
}
@Test
public final void testCardiacAge() {
final DiscreteNumericalVariable var = SampleModels.cardiacAgeVariable();
final Patient patient = SampleCalculations.dummyPatientWithVitals(1);
final Collection<DiscreteNumericalVariable> vars = ImmutableSet.of(var);
// Use VariableEntry to generate the expected dynamic values.
final VariableEntry expected =
new VariableEntry(vars)
.putDynamicValue(
VariableEntry.makeNumericalInputName(var.getKey()),
String.valueOf(patient.getAge()));
verifyRetrievedValue(vars, patient, expected.getDynamicValues());
}
/**
* This method adds all of the necessary information for the lab variables to the expected map so
* the values can be compared later.
*
* @param expected [out] to populate expected dynamic values
* @param vars [out] a list of AbstractVariables needed for the calculation
* @param patient the patient for the current calculation
*/
private void addAllLabs(
final VariableEntry expected, final List<AbstractVariable> vars, final Patient patient) {
for (final String key : LAB_MAP.keySet()) {
// Warning: semantic coupling. Simluate what VariableEntry would do if we
// constructed it using the variable list.
expected.putDynamicValue(key, VariableEntry.SPECIAL_NUMERICAL);
final ValueRetriever retriever = LAB_MAP.get(key);
vars.add(makeDiscreteNumerical(key, retriever));
final RetrievedValue labValue = patient.getLabs().get(VistaLabs.valueOf(retriever.name()));
final String inputKey = VariableEntry.makeNumericalInputName(key);
expected.putRetrievedValue(inputKey, labValue);
}
}
