/**
* This method will check that replacing the current DE with a mapping to existing DE will not
* conflict with any other DE.
*
* @param oldDe currentMapping
* @param newDe new Mapping
* @return null if there is no conflict. The conflicting DE if there is a conflict.
*/
public static DataElement checkConflict(DataElement oldDe, DataElement newDe) {
ObjectClass oc = oldDe.getDataElementConcept().getObjectClass();
if (oc.getPublicId() != null) {
// Verify conflicts
if (!newDe.getDataElementConcept().getObjectClass().getPublicId().equals(oc.getPublicId())
|| !newDe.getDataElementConcept().getObjectClass().getVersion().equals(oc.getVersion())) {
// Oc was already mapped by an existing DE. This DE conflicts with the previous mapping.
// Now we need to find out what DE set the oc_id previously
// return newDe;
List<DataElement> des =
ElementsLists.getInstance().getElements(DomainObjectFactory.newDataElement());
for (DataElement de : des) {
if (de.getDataElementConcept().getObjectClass()
!= oldDe.getDataElementConcept().getObjectClass()) continue;
if (StringUtil.isEmpty(de.getPublicId()) || de.getVersion() == null) continue;
String ocId = de.getDataElementConcept().getObjectClass().getPublicId();
if (oldDe != de
&& ocId != null
&& !ocId.equals(newDe.getDataElementConcept().getObjectClass().getPublicId())) {
return de;
}
}
// we shouldn't be here
return null;
}
}
return null;
}
private void clear() {
disableCDELinks();
tempDE = DomainObjectFactory.newDataElement();
ValueDomain vd = DomainObjectFactory.newValueDomain();
List<AttributeDatatypePair> attTypesPairs =
ElementsLists.getInstance().getElements(new AttributeDatatypePair("", ""));
String datatype = null;
String attributeName = LookupUtil.lookupFullName(de);
for (AttributeDatatypePair pair : attTypesPairs) {
if (pair.getAttributeName().equals(attributeName)) {
datatype = pair.getDatatype();
}
}
if (datatype == null) datatype = "";
else {
if (DatatypeMapping.getKeys().contains(datatype.toLowerCase()))
datatype = DatatypeMapping.getMapping().get(datatype.toLowerCase());
}
vd.setLongName(datatype);
tempDE.setValueDomain(vd);
deLongNameValueLabel.setText("");
deIdValueLabel.setText("");
deContextNameValueLabel.setText("");
vdLongNameValueLabel.setText("");
conceptCodeSummaryValue.setText("");
conceptNameSummaryValue.setText("");
}
private void updateFields() {
deLongNameValueLabel.setText(tempDE.getLongName());
deIdValueLabel.setText(ConventionUtil.publicIdVersion(tempDE));
if (tempDE.getContext() != null) deContextNameValueLabel.setText(tempDE.getContext().getName());
else deContextNameValueLabel.setText("");
if (tempDE.getValueDomain() != null)
vdLongNameValueLabel.setText(tempDE.getValueDomain().getLongName());
else vdLongNameValueLabel.setText("");
if (prefs.getShowConceptCodeNameSummary()) {
List<gov.nih.nci.ncicb.cadsr.domain.Concept> concepts =
cadsrModule.getConcepts(tempDE.getDataElementConcept().getProperty());
if (concepts != null && concepts.size() > 0) {
StringBuffer conceptCodeSummary = new StringBuffer();
StringBuffer conceptNameSummary = new StringBuffer();
for (Concept con : concepts) {
conceptCodeSummary.append(con.getPreferredName());
conceptCodeSummary.append(" ");
conceptNameSummary.append(con.getLongName());
conceptNameSummary.append(" ");
}
conceptCodeSummaryValue.setText(conceptCodeSummary.toString());
conceptNameSummaryValue.setText(conceptNameSummary.toString());
}
}
enableCDELinks();
}
public void updateNode(UMLNode node) {
this.node = node;
if ((node.getUserObject() instanceof DataElement)) {
de = (DataElement) node.getUserObject();
if (de.getPublicId() != null) {
deLongNameValueLabel.setText("<html><body>" + de.getLongName() + "</body></html>");
deIdValueLabel.setText(de.getPublicId() + " v" + de.getVersion());
deContextNameValueLabel.setText(de.getContext().getName());
vdLongNameValueLabel.setText(de.getValueDomain().getLongName());
// if preference is set to show Concept Summary, then :
// call cadsrModulde.getConcepts(de.getDataElementConcept().getProperty())
// and show the 2 fields
if (prefs.getShowConceptCodeNameSummary()) {
List<gov.nih.nci.ncicb.cadsr.domain.Concept> concepts =
cadsrModule.getConcepts(de.getDataElementConcept().getProperty());
if (concepts != null && concepts.size() > 0) {
StringBuffer conceptCodeSummary = new StringBuffer();
StringBuffer conceptNameSummary = new StringBuffer();
for (Concept con : concepts) {
conceptCodeSummary.append(con.getPreferredName());
conceptCodeSummary.append(" ");
conceptNameSummary.append(con.getLongName());
conceptNameSummary.append(" ");
}
conceptCodeSummaryValue.setText(conceptCodeSummary.toString());
conceptNameSummaryValue.setText(conceptNameSummary.toString());
}
}
enableCDELinks();
} else clear();
firePropertyChangeEvent(
new PropertyChangeEvent(
this, ButtonPanel.SWITCH, null, StringUtil.isEmpty(de.getPublicId())));
}
}
public static AdminComponent checkDuplicate(DataElement currentDe, DataElement newDataElement) {
ElementsLists elements = ElementsLists.getInstance();
// 1. Verify that this DE will not implicitely map the OC to one
// that is already used in the model.
List<ObjectClass> ocs = elements.getElements(DomainObjectFactory.newObjectClass());
if (ocs != null) {
for (ObjectClass oc : ocs) {
if (oc.getPublicId() != null) {
if (currentDe.getDataElementConcept().getObjectClass() != oc)
if (oc.getPublicId()
.equals(newDataElement.getDataElementConcept().getObjectClass().getPublicId()))
return oc;
}
}
}
// 2. Check that we don't already have this exact DE public ID
List<DataElement> des = elements.getElements(DomainObjectFactory.newDataElement());
for (DataElement de : des) {
if (de != currentDe) {
if (!StringUtil.isEmpty(de.getPublicId())
&& de.getPublicId().equals(newDataElement.getPublicId())) return de;
}
}
// if(des != null && ocs != null) {
// for(ObjectClass oc : ocs)
//// Map<String, DataElement> deList = new HashMap<String, DataElement>();
// for(DataElement de : des)
// if(newDataElement.getDataElementConcept().getObjectClass() ==
// de.getDataElementConcept().getObjectClass())
// if(newDataElement.getPublicId() == de.getPublicId())
// return false;
// }
return null;
}
private void initUI() {
this.setLayout(new BorderLayout());
JPanel flowPanel = new JPanel(new FlowLayout());
JPanel mainPanel = new JPanel(new GridBagLayout());
JPanel conceptCodeNameSummaryPanel = new JPanel(new GridBagLayout());
JPanel topPanel = new JPanel(new BorderLayout());
if (prefs.getShowConceptCodeNameSummary()) {
UIUtil.insertInBag(conceptCodeNameSummaryPanel, conceptCodeSummaryLabel, 0, 1);
UIUtil.insertInBag(conceptCodeNameSummaryPanel, conceptCodeSummaryValue, 1, 1);
UIUtil.insertInBag(conceptCodeNameSummaryPanel, conceptNameSummaryLabel, 0, 2);
UIUtil.insertInBag(conceptCodeNameSummaryPanel, conceptNameSummaryValue, 1, 2);
}
UIUtil.insertInBag(mainPanel, deLongNameTitleLabel, 0, 1);
UIUtil.insertInBag(mainPanel, deLongNameValueLabel, 1, 1);
UIUtil.insertInBag(mainPanel, deIdTitleLabel, 0, 2);
UIUtil.insertInBag(mainPanel, deIdValueLabel, 1, 2);
UIUtil.insertInBag(mainPanel, deContextNameTitleLabel, 0, 3);
UIUtil.insertInBag(mainPanel, deContextNameValueLabel, 1, 3);
UIUtil.insertInBag(mainPanel, vdLongNameTitleLabel, 0, 4);
UIUtil.insertInBag(mainPanel, vdLongNameValueLabel, 1, 4);
// Un-Comment if CDEBrowserLink can be directed to CDEBrowser application.
// UIUtil.insertInBag(mainPanel, cdeBrowserLinkLabel, 0, 5);
// UIUtil.insertInBag(mainPanel, cdeBrowserLinkValueLabel, 1, 5);
UIUtil.insertInBag(mainPanel, clearButton, 0, 6, 2, 1);
UIUtil.insertInBag(mainPanel, searchDeButton, 1, 6);
cdeBrowserLinkValueLabel.addMouseListener(
new MouseListener() {
public void mouseClicked(MouseEvent mouseEvent) {
String errMsg = "Error attempting to launch web browser";
String osName = System.getProperty("os.name");
String url = getCDEBrowserURL();
try {
if (osName.startsWith("Mac OS")) {
Class fileMgr = Class.forName("com.apple.eio.FileManager");
Method openURL = fileMgr.getDeclaredMethod("openURL", new Class[] {String.class});
openURL.invoke(null, new Object[] {url});
} else if (osName.startsWith("Windows"))
Runtime.getRuntime().exec("rundll32 url.dll,FileProtocolHandler " + url);
else { // assume Unix or Linux
String[] browsers = {
"firefox", "opera", "konqueror", "epiphany", "mozilla", "netscape"
};
String browser = null;
for (int count = 0; count < browsers.length && browser == null; count++)
if (Runtime.getRuntime().exec(new String[] {"which", browsers[count]}).waitFor()
== 0) browser = browsers[count];
if (browser == null) throw new Exception("Could not find web browser");
else Runtime.getRuntime().exec(new String[] {browser, url});
}
} catch (Exception e) {
JOptionPane.showMessageDialog(null, errMsg + ":\n" + e.getLocalizedMessage());
}
}
public void mousePressed(MouseEvent e) {}
public void mouseReleased(MouseEvent e) {}
public void mouseEntered(MouseEvent e) {}
public void mouseExited(MouseEvent e) {}
});
disableCDELinks();
JPanel titlePanel = new JPanel();
JLabel title = new JLabel("Map to CDE");
titlePanel.add(title);
flowPanel.add(mainPanel);
topPanel.add(conceptCodeNameSummaryPanel, BorderLayout.NORTH);
topPanel.add(titlePanel, BorderLayout.SOUTH);
this.add(flowPanel);
this.add(topPanel, BorderLayout.NORTH);
searchDeButton.setActionCommand(SEARCH);
clearButton.setActionCommand(CLEAR);
searchDeButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent event) {
JButton button = (JButton) event.getSource();
if (button.getActionCommand().equals(SEARCH)) {
CadsrDialog cd = BeansAccessor.getCadsrDEDialog();
// update dialog with current node
cd.init(node);
cd.setAlwaysOnTop(true);
cd.setVisible(true);
Object o = cd.getAdminComponent();
if (o == null) return;
tempDE = (DataElement) o;
if (tempDE != null) {
// Check for conflict
DataElement confDe = DEMappingUtil.checkConflict(de, tempDE);
if (confDe != null) {
JOptionPane.showMessageDialog(
null,
PropertyAccessor.getProperty(
"de.conflict",
new String[] {
de.getDataElementConcept().getProperty().getLongName(),
confDe.getDataElementConcept().getProperty().getLongName()
}),
"Conflict",
JOptionPane.ERROR_MESSAGE);
return;
}
if (tempDE != null) {
AdminComponent ac = DEMappingUtil.checkDuplicate(de, tempDE);
if (ac != null) {
if (ac instanceof ObjectClass)
JOptionPane.showMessageDialog(
null,
"This creates a duplicate mapping with "
+ LookupUtil.lookupFullName((ObjectClass) ac),
"Conflict",
JOptionPane.ERROR_MESSAGE);
if (ac instanceof DataElement)
JOptionPane.showMessageDialog(
null,
"This creates a duplicate mapping with "
+ ((DataElement) ac)
.getDataElementConcept()
.getProperty()
.getLongName(),
"Conflict",
JOptionPane.ERROR_MESSAGE);
return;
}
}
updateFields();
firePropertyChangeEvent(
new PropertyChangeEvent(this, ApplyButtonPanel.SAVE, null, true));
// firePropertyChangeEvent(
// new PropertyChangeEvent(this,
// ButtonPanel.SWITCH, null, false));
modified = true;
}
}
}
});
clearButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent event) {
JButton button = (JButton) event.getSource();
if (button.getActionCommand().equals(CLEAR)) {
clear();
firePropertyChangeEvent(
new PropertyChangeEvent(this, ApplyButtonPanel.SAVE, null, true));
modified = true;
// fireElementChangeEvent(new ElementChangeEvent(node));
}
}
});
if ((node.getUserObject() instanceof DataElement))
firePropertyChangeEvent(
new PropertyChangeEvent(
this, ButtonPanel.SWITCH, null, StringUtil.isEmpty(de.getPublicId())));
}
public void apply() {
if (!modified) return;
// uncomment to enable feature
// if(inheritedAttributes.isInherited(de)) {
// if(!userPrefs.getBoolean("de.over.vd.mapping.warning")) {
// DontWarnMeAgainDialog dontWarnDialog = new
// DontWarnMeAgainDialog("de.over.vd.mapping.warning");
// }
// }
modified = false;
de.setLongName(tempDE.getLongName());
de.setPublicId(tempDE.getPublicId());
de.setVersion(tempDE.getVersion());
de.setContext(tempDE.getContext());
de.setValueDomain(tempDE.getValueDomain());
fireElementChangeEvent(new ElementChangeEvent(node));
if (tempDE.getDataElementConcept() != null) {
if (de.getDataElementConcept().getObjectClass().getPublicId() == null
|| de.getDataElementConcept().getObjectClass().getPublicId().length() == 0) {
JOptionPane.showMessageDialog(
null,
PropertyAccessor.getProperty("oc.mapping.warning"),
"Please note",
JOptionPane.INFORMATION_MESSAGE);
}
de.getDataElementConcept()
.getObjectClass()
.setPublicId(tempDE.getDataElementConcept().getObjectClass().getPublicId());
de.getDataElementConcept()
.getObjectClass()
.setVersion(tempDE.getDataElementConcept().getObjectClass().getVersion());
de.getDataElementConcept()
.getObjectClass()
.setLongName(tempDE.getDataElementConcept().getObjectClass().getLongName());
de.getDataElementConcept()
.getProperty()
.setPublicId(tempDE.getDataElementConcept().getProperty().getPublicId());
de.getDataElementConcept()
.getProperty()
.setVersion(tempDE.getDataElementConcept().getProperty().getVersion());
} else {
boolean found = false;
List<DataElement> des =
ElementsLists.getInstance().getElements(DomainObjectFactory.newDataElement());
for (DataElement curDe : des) {
if (curDe.getDataElementConcept().getObjectClass()
== de.getDataElementConcept().getObjectClass())
if (!StringUtil.isEmpty(curDe.getPublicId())) {
found = true;
}
}
if (!found) {
de.getDataElementConcept().getObjectClass().setPublicId(null);
de.getDataElementConcept().getObjectClass().setVersion(null);
}
}
if (tempDE.getDataElementConcept() != null) {
firePropertyChangeEvent(new PropertyChangeEvent(this, ButtonPanel.SWITCH, null, false));
firePropertyChangeEvent(new PropertyChangeEvent(this, ApplyButtonPanel.REVIEW, null, true));
} else {
firePropertyChangeEvent(new PropertyChangeEvent(this, ButtonPanel.SWITCH, null, true));
firePropertyChangeEvent(new PropertyChangeEvent(this, ApplyButtonPanel.REVIEW, null, false));
}
firePropertyChangeEvent(new PropertyChangeEvent(this, ApplyButtonPanel.SAVE, null, false));
}
