AbstractDataRetrievalHelper(
GenomicDataSourceConfiguration genomicSource,
DataService dataService,
SearchService searchService,
CaIntegrator2Dao dao,
ArrayDataService arrayDataService) {
this.genomicSource = genomicSource;
this.dataService = dataService;
this.searchService = searchService;
this.dao = dao;
this.arrayDataService = arrayDataService;
this.centralTendencyCalculator =
new CentralTendencyCalculator(
genomicSource.getTechnicalReplicatesCentralTendency(),
genomicSource.isUseHighVarianceCalculation(),
genomicSource.getHighVarianceThreshold(),
genomicSource.getHighVarianceCalculationType());
}
@Test
public void testValidateForControlMapping() {
StudyConfiguration studyConfiguration = new StudyConfiguration();
action.setStudyConfiguration(studyConfiguration);
action.validate();
assertTrue(action.hasErrors());
action.clearErrorsAndMessages();
action.setControlSampleSetName("ControlSampleSet1");
action.validate();
assertTrue(action.hasErrors());
action.clearErrorsAndMessages();
action.setControlSampleFile(TestDataFiles.REMBRANDT_CONTROL_SAMPLES_FILE);
action.validate();
assertFalse(action.hasFieldErrors());
action.clearErrorsAndMessages();
SampleSet controlSampleSet = new SampleSet();
controlSampleSet.setName("ControlSampleSet1");
GenomicDataSourceConfiguration genomicSource = new GenomicDataSourceConfiguration();
studyConfiguration.getGenomicDataSources().add(genomicSource);
genomicSource.getControlSampleSetCollection().add(controlSampleSet);
action.validate();
assertTrue(action.hasFieldErrors());
}