/**
* Add the sample to the export dialog and close.
*
* @param evt
*/
private void okButtonActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_okButtonActionPerformed
ArrayList<CvTerm> cvTerms = new ArrayList<CvTerm>();
// add species
if (speciesJComboBox.getSelectedIndex() > 0
&& speciesJComboBox.getSelectedIndex() < speciesJComboBox.getItemCount() - 1) {
if (!((String) speciesJComboBox.getSelectedItem()).equalsIgnoreCase(comboboxSeparator)) {
cvTerms.add(
new CvTerm(
"NEWT",
speciesMap.get((String) speciesJComboBox.getSelectedItem()),
(String) speciesJComboBox.getSelectedItem(),
null));
}
}
// add tissue type
if (tissueJComboBox.getSelectedIndex() > 0
&& tissueJComboBox.getSelectedIndex() < tissueJComboBox.getItemCount() - 1) {
if (!((String) tissueJComboBox.getSelectedItem()).equalsIgnoreCase(comboboxSeparator)) {
cvTerms.add(
new CvTerm(
"BTO",
tissueMap.get((String) tissueJComboBox.getSelectedItem()),
(String) tissueJComboBox.getSelectedItem(),
null));
}
}
// add cell type
if (cellTypeJComboBox.getSelectedIndex() > 0
&& cellTypeJComboBox.getSelectedIndex() < cellTypeJComboBox.getItemCount() - 1) {
if (!((String) cellTypeJComboBox.getSelectedItem()).equalsIgnoreCase(comboboxSeparator)) {
cvTerms.add(
new CvTerm(
"CL",
cellTypeMap.get((String) cellTypeJComboBox.getSelectedItem()),
(String) cellTypeJComboBox.getSelectedItem(),
null));
}
}
// add additional cv terms
for (int i = 0; i < sampleCvTermsJTable.getRowCount(); i++) {
cvTerms.add(
new CvTerm(
(String) sampleCvTermsJTable.getValueAt(i, 1),
(String) sampleCvTermsJTable.getValueAt(i, 2),
(String) sampleCvTermsJTable.getValueAt(i, 3),
(String) sampleCvTermsJTable.getValueAt(i, 4)));
}
prideExportDialog.setSample(new Sample(sampleNameJTextField.getText(), cvTerms));
dispose();
} // GEN-LAST:event_okButtonActionPerformed
/**
* Try to delete the given sample.
*
* @param evt
*/
private void deleteButtonActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_deleteButtonActionPerformed
dispose();
prideExportDialog.deleteSample(
new Sample(sampleNameJTextField.getText(), new ArrayList<CvTerm>()));
} // GEN-LAST:event_deleteButtonActionPerformed