/** This is (mostly) copied from CRF4.java */
public boolean[][] labelConnectionsIn(
Alphabet outputAlphabet, InstanceList trainingSet, String start) {
int numLabels = outputAlphabet.size();
boolean[][] connections = new boolean[numLabels][numLabels];
for (int i = 0; i < trainingSet.size(); i++) {
Instance instance = trainingSet.getInstance(i);
FeatureSequence output = (FeatureSequence) instance.getTarget();
for (int j = 1; j < output.size(); j++) {
int sourceIndex = outputAlphabet.lookupIndex(output.get(j - 1));
int destIndex = outputAlphabet.lookupIndex(output.get(j));
assert (sourceIndex >= 0 && destIndex >= 0);
connections[sourceIndex][destIndex] = true;
}
}
// Handle start state
if (start != null) {
int startIndex = outputAlphabet.lookupIndex(start);
for (int j = 0; j < outputAlphabet.size(); j++) {
connections[startIndex][j] = true;
}
}
return connections;
}
public void test(
Transducer transducer,
InstanceList data,
String description,
PrintStream viterbiOutputStream) {
int[] ntrue = new int[segmentTags.length];
int[] npred = new int[segmentTags.length];
int[] ncorr = new int[segmentTags.length];
LabelAlphabet dict = (LabelAlphabet) transducer.getInputPipe().getTargetAlphabet();
for (int i = 0; i < data.size(); i++) {
Instance instance = data.getInstance(i);
Sequence input = (Sequence) instance.getData();
Sequence trueOutput = (Sequence) instance.getTarget();
assert (input.size() == trueOutput.size());
Sequence predOutput = transducer.viterbiPath(input).output();
assert (predOutput.size() == trueOutput.size());
List trueSegs = new ArrayList();
List predSegs = new ArrayList();
addSegs(trueSegs, trueOutput);
addSegs(predSegs, predOutput);
// System.out.println("FieldF1Evaluator instance "+instance.getName ());
// printSegs(dict, trueSegs, "True");
// printSegs(dict, predSegs, "Pred");
for (Iterator it = predSegs.iterator(); it.hasNext(); ) {
Segment seg = (Segment) it.next();
npred[seg.tag]++;
if (trueSegs.contains(seg)) {
ncorr[seg.tag]++;
}
}
for (Iterator it = trueSegs.iterator(); it.hasNext(); ) {
Segment seg = (Segment) it.next();
ntrue[seg.tag]++;
}
}
DecimalFormat f = new DecimalFormat("0.####");
logger.info(description + " per-field F1");
for (int tag = 0; tag < segmentTags.length; tag++) {
double precision = ((double) ncorr[tag]) / npred[tag];
double recall = ((double) ncorr[tag]) / ntrue[tag];
double f1 = (2 * precision * recall) / (precision + recall);
Label name = dict.lookupLabel(segmentTags[tag]);
logger.info(
" segments "
+ name
+ " true = "
+ ntrue[tag]
+ " pred = "
+ npred[tag]
+ " correct = "
+ ncorr[tag]);
logger.info(
" precision="
+ f.format(precision)
+ " recall="
+ f.format(recall)
+ " f1="
+ f.format(f1));
}
}