@Override
public ProtocolFormXmlData creatNewProtocol(ProtocolFormType protocolFormType)
throws XPathExpressionException, IOException, SAXException {
Protocol p = new Protocol();
Date created = new Date();
p.setCreated(created);
p.setLocked(false);
p = protocolDao.saveOrUpdate(p);
p.setProtocolIdentifier(Long.toString(baseProtocolIdentifier + p.getId()));
// protocol.metadataxml always start with /protocol/
// String protocolMetaDataXmlString = "<protocol id=\"" + p.getId() + "\" identifier=\"" +
// p.getProtocolIdentifier() + "\" type=\""+ protocolFormType.getDescription()
// +"\"></protocol>";
String protocolMetaDataXmlString =
(protocolFormType.equals(ProtocolFormType.NEW_SUBMISSION))
? "<protocol id=\""
+ p.getId()
+ "\" identifier=\""
+ p.getProtocolIdentifier()
+ "\"></protocol>"
: "<protocol id=\""
+ p.getId()
+ "\" identifier=\""
+ p.getProtocolIdentifier()
+ "\" type=\""
+ protocolFormType.getDescription()
+ "\"></protocol>";
;
p.setMetaDataXml(protocolMetaDataXmlString);
p = protocolDao.saveOrUpdate(p);
String protocolFormXmlString =
"<"
+ protocolFormType.getBaseTag()
+ " id=\""
+ p.getId()
+ "\" identifier=\""
+ p.getProtocolIdentifier()
+ "\" type=\""
+ protocolFormType.getDescription()
+ "\"></"
+ protocolFormType.getBaseTag()
+ ">";
ProtocolForm f = new ProtocolForm();
f.setProtocolFormType(protocolFormType);
f.setProtocol(p);
f.setCreated(created);
f.setMetaDataXml(protocolFormXmlString);
f.setParent(f);
f.setLocked(false);
f = protocolFormDao.saveOrUpdate(f);
ProtocolFormXmlData fxd = new ProtocolFormXmlData();
fxd.setProtocolForm(f);
fxd.setXmlData(protocolFormXmlString);
fxd.setProtocolFormXmlDataType(protocolFormType.getDefaultProtocolFormXmlDataType());
fxd.setParent(fxd);
fxd.setCreated(created);
fxd = protocolFormXmlDataDao.saveOrUpdate(fxd);
Map<ProtocolFormXmlDataType, ProtocolFormXmlData> protocolFormXmlDatas =
new HashMap<ProtocolFormXmlDataType, ProtocolFormXmlData>(0);
protocolFormXmlDatas.put(protocolFormType.getDefaultProtocolFormXmlDataType(), fxd);
f.setTypedProtocolFormXmlDatas(protocolFormXmlDatas);
User currentUser = userService.getCurrentUser();
protocolFormService.triggerPIAction("CREATE", f, currentUser, null);
objectAclService.updateObjectAclByUser(Protocol.class, p.getId(), currentUser);
return fxd;
}
@RequestMapping(
value =
"/ajax/protocols/{protocolId}/protocol-forms/{protocolFormId}/reportable-new-information/protocol-form-xml-datas/{protocolFormXmlDataId}/validate",
method = RequestMethod.GET)
public @ResponseBody List<ValidationResponse> validateProtocolReportableNewInformationForm(
@PathVariable("protocolFormXmlDataId") long protocolFormXmlDataId) {
ProtocolFormXmlData protocolXmlData = protocolFormXmlDataDao.findById(protocolFormXmlDataId);
String xmldata = protocolXmlData.getXmlData();
List<ValidationResponse> validationResponses = new ArrayList<ValidationResponse>();
if (StringUtils.hasText(xmldata)) {
List<Rule> reportableNewInformationValidationRules =
getValidationRuleContainer()
.getValidationRules("reportableNewInformationValidationRules");
Assert.notNull(reportableNewInformationValidationRules);
Set<String> valueKeys =
getValidationRuleContainer()
.getCachedValueKeys("reportableNewInformationValidationRules");
Assert.notNull(valueKeys);
Map<String, List<String>> values = null;
// setup values
try {
values = xmlProcessor.listElementStringValuesByPaths(valueKeys, xmldata);
} catch (XPathExpressionException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (SAXException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
validationResponses =
validationRuleHandler.validate(reportableNewInformationValidationRules, values);
}
if (!isReportableOrNot(protocolXmlData)) {
Constraint notReportableConstraint = new Constraint();
Map<String, Object> notReportableAdditionalData = new HashMap<String, Object>();
notReportableConstraint.setConstraintLevel(ConstraintLevel.ERROR);
notReportableConstraint.setErrorMessage(
"This event/information does not meet the criteria for an Unanticipated Problem Involving Risk "
+ "to Subjects or Others (UPIRTSO) and does not require immediate reporting to the IRB."
+ "<br/>"
+ "Please submit the information in summary format at Continuing Review."
+ "<br/>"
+ "A suggested summary format is available at:<a href=\"http://www.uams.edu/irb/Reporting%20Events%20and%20Deviations.asp\" target=\"_blank\">http://www.uams.edu/irb/Reporting%20Events%20and%20Deviations.asp</a>"
+ "<br/>"
+ "The IRB recommends that events be compiled throughout the year."
+ "<br/>"
+ "If you need to update documents now, please do so using a Modification.");
notReportableAdditionalData.put("pagename", "Review");
notReportableAdditionalData.put("pageref", "review");
ValidationResponse budgetVP =
new ValidationResponse(notReportableConstraint, notReportableAdditionalData);
validationResponses.add(budgetVP);
}
return validationResponses;
}