@Test
public void testPersistPositionAlreadyUsed() throws BiobankCheckException, Exception {
parentSpc.persist();
RowColPos pos = childSpc.getPosition();
SpecimenWrapper duplicate =
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
pos.getRow(),
pos.getCol());
try {
duplicate.persist();
Assert.fail("should not be allowed to add an specimen in a position that is not empty");
} catch (BiobankSessionException bce) {
Assert.assertTrue(true);
}
duplicate.setParent(duplicate.getParentContainer(), new RowColPos(2, 3));
duplicate.persist();
duplicate.setInventoryId(Utils.getRandomString(5));
duplicate.persist();
}
@Test
public void testGetFormattedLinkDate() throws Exception {
Date date = Utils.getRandomDate();
parentSpc.setCreatedAt(date);
SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd HH:mm");
Assert.assertTrue(sdf.format(date).equals(parentSpc.getFormattedCreatedAt()));
}
@Test
public void testGetSpecimensInSiteWithPositionLabel() throws Exception {
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper sampleType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(sampleType);
childSpc.setInventoryId(Utils.getRandomString(5));
childSpc.persist();
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
1);
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
1,
0);
childSpc =
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
2);
childSpc.setInventoryId(Utils.getRandomString(5));
childSpc.persist();
List<SpecimenWrapper> specimens =
SpecimenWrapper.getSpecimensInSiteWithPositionLabel(
appService, site, childSpc.getPositionString(true, false));
Assert.assertEquals(1, specimens.size());
Assert.assertEquals(specimens.get(0), childSpc);
}
@Test
public void testGetSpecimen() throws Exception {
SpecimenWrapper foundSpecimen =
SpecimenWrapper.getSpecimen(appService, childSpc.getInventoryId());
Assert.assertNotNull(foundSpecimen);
Assert.assertEquals(foundSpecimen, childSpc);
foundSpecimen = SpecimenWrapper.getSpecimen(appService, Utils.getRandomString(5));
Assert.assertNull(foundSpecimen);
Assert.fail("how to test the exception throwing?");
}
public static Date getUniqueDate(Random r) {
if (usedDates == null) {
usedDates = new ArrayList<Date>();
}
Date id;
do {
id = Utils.getRandomDate();
} while (usedDates.contains(id));
usedDates.add(id);
return id;
}
public static String getNewInventoryId(Random r) {
if (inventoryIds == null) {
inventoryIds = new ArrayList<String>();
}
String id;
do {
id = Utils.getRandomString(10, 20);
} while (inventoryIds.contains(id));
inventoryIds.add(id);
return id;
}
public static String getUniqueWorksheet(Random r) {
if (usedWorksheets == null) {
usedWorksheets = new ArrayList<String>();
}
String worksheet;
do {
worksheet = Utils.getRandomString(20);
} while (usedWorksheets.contains(worksheet));
usedWorksheets.add(worksheet);
return worksheet;
}
public static String getNewWaybill(Random r) {
if (usedWaybills == null) {
usedWaybills = new ArrayList<String>();
}
String waybill;
do {
waybill = Utils.getRandomString(10);
} while (usedWaybills.contains(waybill));
usedWaybills.add(waybill);
return waybill;
}
public static String getNewBarcode(Random r) {
if (usedBarcodes == null) {
usedBarcodes = new ArrayList<String>();
}
String newBarcode;
do {
newBarcode = Utils.getRandomString(10, 12);
} while (usedBarcodes.contains(newBarcode));
usedBarcodes.add(newBarcode);
return newBarcode;
}
@Test
public void testAddUserFailAndCsmUser() throws Exception {
UserWrapper user = new UserWrapper(appService);
String login = Utils.getRandomString(300, 400);
user.setLogin(login);
// FIXME should use another test because I should set login length to be
// the same between csm_user and our user table. Maybe in using a
// WrapperTransation with something sending an error to make the commit
// fail
try {
user.persist();
Assert.fail();
} catch (Exception ex) {
Assert.assertTrue("should fail because login is too long", true);
}
// check csm user
UserProvisioningManager upm =
SecurityServiceProvider.getUserProvisioningManager(
BiobankCSMSecurityUtil.APPLICATION_CONTEXT_NAME);
gov.nih.nci.security.authorization.domainobjects.User csmUser = upm.getUser(login);
Assert.assertNull(csmUser);
}
@Test
public void testDebugRandomMethods() throws Exception {
System.out.println(parentSpc.getProcessingEvent());
System.out.println(childSpc.getProcessingEvent());
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper spcType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(spcType);
System.out.println(parentSpc.getProcessingEvent());
System.out.println(childSpc.getProcessingEvent());
ProcessingEventWrapper pevent =
ProcessingEventHelper.addProcessingEvent(
childSpc.getCurrentCenter(), Utils.getRandomDate());
// add aliquoted specimen
SpecimenWrapper specimen =
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
2,
3);
specimen.setInventoryId(Utils.getRandomString(5));
specimen.persist();
pevent.addToSpecimenCollection(Arrays.asList(parentSpc));
pevent.persist();
SpecimenWrapper s2 =
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
2,
4);
s2.setParent(null, null);
s2.setParentSpecimen(null);
s2.persist();
try {
// should find at least one specimen with a parent that is inside a
// processing event
Assert.assertTrue(
DebugUtil.getRandomLinkedAliquotedSpecimens(appService, site.getId()).size() > 0);
Assert.assertTrue(DebugUtil.getRandomAssignedSpecimens(appService, site.getId()).size() > 0);
List<SpecimenWrapper> randomNonAssociatedNonDispatchedSpecimens =
DebugUtil.getRandomNonAssignedNonDispatchedSpecimens(appService, site.getId(), 10);
Assert.assertTrue(randomNonAssociatedNonDispatchedSpecimens.size() > 0);
} catch (Exception e) {
Assert.fail(e.getCause().getMessage());
}
try {
s2.delete();
} catch (Exception e) {
e.printStackTrace();
}
}