public static String getChrom(String chromName) {
Matcher m = chromPattern.matcher(chromName);
if (!m.matches()) {
return chromName;
}
return m.group(1);
}
public static String removePrimerLR(String pname) {
Matcher m = primerLRPattern.matcher(pname);
if (!m.matches()) {
throw new IllegalArgumentException(pname);
}
return m.group(1);
}
public static int[] decodePrimerName(String pname) {
Matcher m = primerNamePattern.matcher(pname);
if (!m.matches()) {
throw new IllegalArgumentException(pname);
}
int[] a = new int[3];
a[0] = Integer.parseInt(m.group(1));
a[1] = Integer.parseInt(m.group(2));
a[2] = Integer.parseInt(m.group(3));
return a;
}