/**
* If this test is run by itself, it leaves the database in a state that is convenient for testing
* from the command line.
*/
@Rollback(value = false)
public void testThatSetsUpForCommandLineTest() throws Exception {
initializeData();
int daysToNofify = 60;
int daysToExpire =
790; // 2 years, 2months (technically, a month is variable, using 30 days for all
// calculations)
LocalDate today = new LocalDate();
LocalDate activityDateToExpireToday = today.minusDays(daysToExpire);
LocalDate activityDateToNotifyToday = today.minusDays(daysToExpire).plusDays(daysToNofify);
Screen screen1ToExpireTodayAfterAdjust =
createScreen("is testing for expiration (760 days after lab activity) today");
screen1ToExpireTodayAfterAdjust.createScreenResult();
screen1ToExpireTodayAfterAdjust.createLibraryScreening(
admin, leadScreener, activityDateToExpireToday);
Screen screen2ToNotifyTodayAfterAdjust =
createScreen("is testing for notification (60 days before expiration) today");
screen2ToNotifyTodayAfterAdjust.createScreenResult();
screen2ToNotifyTodayAfterAdjust.createLibraryScreening(
admin, leadScreener, activityDateToNotifyToday);
Screen screen3AjustementOverridden =
createScreen("is testing for max/min DPED override - Adjustment to the allowed value");
screen3AjustementOverridden.createScreenResult();
screen3AjustementOverridden.createLibraryScreening(
admin, leadScreener, activityDateToExpireToday);
screen3AjustementOverridden.setDataPrivacyExpirationDate(today.plusDays(2));
screen3AjustementOverridden.setMinAllowedDataPrivacyExpirationDate(today.plusDays(1));
Screen screen3aAjustementOverridden =
createScreen("is testing for max/min DPED override - adjustment not allowed - overridden");
screen3aAjustementOverridden.createScreenResult();
screen3aAjustementOverridden.createLibraryScreening(
admin, leadScreener, activityDateToExpireToday);
screen3aAjustementOverridden.setMinAllowedDataPrivacyExpirationDate(today.plusDays(1));
screen3aAjustementOverridden.setDataPrivacyExpirationDate(today.plusDays(1));
Screen screen4Published = createScreen("is testing a published Screen");
screen4Published.createScreenResult();
screen4Published.createLibraryScreening(admin, leadScreener, activityDateToNotifyToday);
screen4Published.addPublication(new Publication());
genericEntityDao.persistEntity(screen1ToExpireTodayAfterAdjust);
genericEntityDao.persistEntity(screen2ToNotifyTodayAfterAdjust);
genericEntityDao.persistEntity(screen3AjustementOverridden);
genericEntityDao.persistEntity(screen3aAjustementOverridden);
genericEntityDao.persistEntity(screen4Published);
genericEntityDao.flush();
}
public void testFindExpired() throws Exception {
initializeData();
LocalDate date = new LocalDate(new Date());
screen1NotExpired = createScreen("SDSL TEST1");
screen1NotExpired.setDataPrivacyExpirationDate(date.plusYears(2));
genericEntityDao.persistEntity(screen1NotExpired);
screen2Expired = createScreen("SDSL TEST2");
screen2Expired.createScreenResult();
screen2Expired.setDataPrivacyExpirationDate(date);
genericEntityDao.persistEntity(screen2Expired);
screen3Expired = createScreen("SDSL TEST3");
screen3Expired.createScreenResult();
screen3Expired.setDataPrivacyExpirationDate(date.minusYears(1));
genericEntityDao.persistEntity(screen3Expired);
screen9ExpiredMaxDatePassed = createScreen("screen9ExpiredMaxDatePassed");
screen9ExpiredMaxDatePassed.createScreenResult();
screen9ExpiredMaxDatePassed.setMinAllowedDataPrivacyExpirationDate(date.minusYears(2));
screen9ExpiredMaxDatePassed.setMaxAllowedDataPrivacyExpirationDate(date.minusYears(2));
screen9ExpiredMaxDatePassed.setDataPrivacyExpirationDate(date.minusYears(2));
genericEntityDao.persistEntity(screen9ExpiredMaxDatePassed);
screen4Default = createScreen("SDSL TEST4");
genericEntityDao.persistEntity(screen4Default);
screen5RnaiExpired = createScreen("Test RNAI expired", ScreenType.RNAI);
screen5RnaiExpired.setDataPrivacyExpirationDate(date.minusYears(1));
screen5RnaiExpired.createScreenResult();
genericEntityDao.persistEntity(screen5RnaiExpired);
screen6ExpiredNoResults = createScreen("test expired no results", ScreenType.RNAI);
screen6ExpiredNoResults.setDataPrivacyExpirationDate(date.minusYears(1));
genericEntityDao.persistEntity(screen6ExpiredNoResults);
screen7ExpiredDropped = createScreen("test expired dropped technical");
screen7ExpiredDropped.setDataPrivacyExpirationDate(date.minusYears(1));
screen7ExpiredDropped.createScreenResult();
screen7ExpiredDropped.createStatusItem(new LocalDate(), ScreenStatus.DROPPED_TECHNICAL);
genericEntityDao.persistEntity(screen7ExpiredDropped);
screen8ExpiredTransferred = createScreen("test expired transferred");
screen8ExpiredTransferred.setDataPrivacyExpirationDate(date.minusYears(1));
screen8ExpiredTransferred.createScreenResult();
screen8ExpiredTransferred.createStatusItem(
new LocalDate(), ScreenStatus.TRANSFERRED_TO_BROAD_INSTITUTE);
genericEntityDao.persistEntity(screen8ExpiredTransferred);
flushAndClear();
// startNewTransaction();
List<Screen> allScreens = genericEntityDao.findAllEntitiesOfType(Screen.class);
for (Screen screen : allScreens) {
log.info(
"allScreens: "
+ screen.getTitle()
+ " , expires: "
+ screen.getDataPrivacyExpirationDate());
}
List<Screen> screens =
screenDataSharingLevelUpdater.findNewExpiredNotNotified(date, ScreenType.SMALL_MOLECULE);
for (Screen screen : screens) {
log.info(
"expiredScreens: "
+ screen.getTitle()
+ " , expires: "
+ screen.getDataPrivacyExpirationDate());
}
assertFalse("no expired screens", screens.isEmpty());
screen1NotExpired = genericEntityDao.reloadEntity(screen1NotExpired);
screen2Expired = genericEntityDao.reloadEntity(screen2Expired);
screen3Expired = genericEntityDao.reloadEntity(screen3Expired);
screen4Default = genericEntityDao.reloadEntity(screen4Default);
screen5RnaiExpired = genericEntityDao.reloadEntity(screen5RnaiExpired);
screen6ExpiredNoResults = genericEntityDao.reloadEntity(screen6ExpiredNoResults);
screen7ExpiredDropped = genericEntityDao.reloadEntity(screen7ExpiredDropped);
screen8ExpiredTransferred = genericEntityDao.reloadEntity(screen8ExpiredTransferred);
screen9ExpiredMaxDatePassed = genericEntityDao.reloadEntity(screen9ExpiredMaxDatePassed);
assertTrue("screen2Expired should be expired: ", screens.contains(screen2Expired));
assertTrue("screen3Expired should be expired: ", screens.contains(screen3Expired));
assertTrue(
"screen9ExpiredMaxDatePassed should be expired: ",
screens.contains(screen9ExpiredMaxDatePassed));
assertFalse("screen4Default should not be expired", screens.contains(screen4Default));
assertFalse("screen1NotExpired should not be expired", screens.contains(screen1NotExpired));
assertFalse(
"screen5RnaiExpired should NOT be expired (unless setting screenType=RNAi)",
screens.contains(screen5RnaiExpired));
assertFalse(
"screen6ExpiredNoResults should not be expired", screens.contains(screen6ExpiredNoResults));
assertFalse(
"screen7ExpiredDropped should not be expired", screens.contains(screen7ExpiredDropped));
assertFalse(
"screen8ExpiredTransferred should not be expired",
screens.contains(screen8ExpiredTransferred));
// just a little test here to see if we get a null or an empty list, find none
screens =
screenDataSharingLevelUpdater.findNewExpiredNotNotified(
date.minusYears(20), ScreenType.SMALL_MOLECULE);
log.info("empty result: " + screens);
assertNotNull(screens);
assertTrue(screens.isEmpty());
screens = screenDataSharingLevelUpdater.findNewExpiredNotNotified(date, ScreenType.RNAI);
assertFalse("no expired screens", screens.isEmpty());
assertTrue(
"only the RNAi screen should be returned (no Small Molecule): " + screens,
screens.size() == 1);
assertTrue(
"screen5RnaiExpired should NOT be expired (unless setting screenType=RNAi)",
screens.contains(screen5RnaiExpired));
}
