public void setValueAt(Object aValue, int row, int col) {
AbstractPartitionData partition = options.dataPartitions.get(row);
switch (col) {
case 0:
String name = ((String) aValue).trim();
if (options.hasPartitionData(name)) {
JOptionPane.showMessageDialog(
frame,
"Duplicate partition name.",
"Illegal Argument Exception",
JOptionPane.ERROR_MESSAGE);
return;
}
if (name.length() > 0) {
options.renamePartition(partition, name);
}
break;
case 5:
// partition.setPloidyType((PloidyType) aValue);
// break;
// case 6:
if (((PartitionSubstitutionModel) aValue).getDataType().equals(partition.getDataType())) {
partition.setPartitionSubstitutionModel((PartitionSubstitutionModel) aValue);
}
break;
case 6:
partition.setPartitionClockModel((PartitionClockModel) aValue);
break;
case 7:
partition.setPartitionTreeModel((PartitionTreeModel) aValue);
break;
}
fireDataChanged();
}
public void linkModels() {
int[] selRows = dataTable.getSelectedRows();
List<AbstractPartitionData> selectedPartitionData = new ArrayList<AbstractPartitionData>();
DataType dateType = null;
for (int row : selRows) {
AbstractPartitionData partition = options.dataPartitions.get(row);
if (dateType == null) {
dateType = partition.getDataType();
} else {
if (partition.getDataType() != dateType) {
JOptionPane.showMessageDialog(
this,
"Can only link the models for data partitions \n"
+ "of the same data type (e.g., nucleotides)",
"Unable to link models",
JOptionPane.ERROR_MESSAGE);
return;
}
}
if (!selectedPartitionData.contains(partition)) selectedPartitionData.add(partition);
}
Object[] modelArray = options.getPartitionSubstitutionModels(selectedPartitionData).toArray();
if (selectModelDialog == null) {
selectModelDialog = new SelectModelDialog(frame);
}
int result = selectModelDialog.showDialog(modelArray);
if (result != JOptionPane.CANCEL_OPTION) {
PartitionSubstitutionModel model = selectModelDialog.getModel();
if (selectModelDialog.getMakeCopy()) {
model.setName(selectModelDialog.getName());
}
for (AbstractPartitionData partition : selectedPartitionData) {
partition.setPartitionSubstitutionModel(model);
}
}
if (options.getPartitionSubstitutionModels(Microsatellite.INSTANCE).size() <= 1) {
options.shareMicroSat = true;
}
modelsChanged();
fireDataChanged();
repaint();
}
public void unlinkModels() {
int[] selRows = dataTable.getSelectedRows();
for (int row : selRows) {
AbstractPartitionData partition = options.dataPartitions.get(row);
PartitionSubstitutionModel model = partition.getPartitionSubstitutionModel();
if (!model.getName().equals(partition.getName())) {
PartitionSubstitutionModel newModel =
new PartitionSubstitutionModel(options, partition.getName(), model);
partition.setPartitionSubstitutionModel(newModel);
}
}
modelsChanged();
fireDataChanged();
repaint();
}