@Test
public void testSubjectCriteriaCorrect() {
DichotomousCriterion criterion1 = new DichotomousCriterion();
criterion1.setName("criterion1");
DichotomousCriterion criterion2 = new DichotomousCriterion();
criterion2.setName("criterion2");
List<
AbstractCriterion<
? extends Serializable, ? extends AbstractConstraint<? extends Serializable>>>
criteria =
new ArrayList<
AbstractCriterion<
? extends Serializable,
? extends AbstractConstraint<? extends Serializable>>>();
criteria.add(criterion1);
criteria.add(criterion2);
validTrial.setCriteria(criteria);
assertEquals(2, validTrial.getCriteria().size());
assertTrue(DichotomousCriterion.class.isInstance(validTrial.getCriteria().get(0)));
assertEquals("criterion1", validTrial.getCriteria().get(0).getName());
assertTrue(DichotomousCriterion.class.isInstance(validTrial.getCriteria().get(1)));
assertEquals("criterion2", validTrial.getCriteria().get(1).getName());
List<
AbstractCriterion<
? extends Serializable, ? extends AbstractConstraint<? extends Serializable>>>
list =
new ArrayList<
AbstractCriterion<
? extends Serializable,
? extends AbstractConstraint<? extends Serializable>>>();
validTrial.setCriteria(list);
assertEquals(list, validTrial.getCriteria());
}
@Test
public void testAddSubjectCriteria() {
DichotomousCriterion criterion1 = new DichotomousCriterion();
criterion1.setName("criterion1");
DichotomousCriterion criterion2 = new DichotomousCriterion();
criterion2.setName("criterion2");
validTrial.addCriterion(criterion1);
validTrial.addCriterion(criterion2);
assertEquals(2, validTrial.getCriteria().size());
assertTrue(DichotomousCriterion.class.isInstance(validTrial.getCriteria().get(0)));
assertEquals("criterion1", validTrial.getCriteria().get(0).getName());
assertTrue(DichotomousCriterion.class.isInstance(validTrial.getCriteria().get(1)));
assertEquals("criterion2", validTrial.getCriteria().get(1).getName());
assertValid(validTrial);
}
@Test
public void testStrataNamesAndIdsStrataCriterionsTrialSite() {
TrialSite site1 = new TrialSite();
site1.setId(1);
site1.setName("site1");
TrialSite site2 = new TrialSite();
site2.setId(2);
site2.setName("site2");
validTrial.addParticipatingSite(site1);
validTrial.addParticipatingSite(site2);
validTrial.setStratifyTrialSite(true);
DichotomousCriterion criterion1 = new DichotomousCriterion();
criterion1.setId(1);
criterion1.setName("criterion1");
criterion1.setOption1("option1");
criterion1.setOption2("option2");
try {
DichotomousConstraint d1 = new DichotomousConstraint(Arrays.asList(new String[] {"option1"}));
d1.setId(1);
criterion1.addStrata(d1);
DichotomousConstraint d2 = new DichotomousConstraint(Arrays.asList(new String[] {"option2"}));
d2.setId(2);
criterion1.addStrata(d2);
} catch (ContraintViolatedException e) {
fail();
}
DichotomousCriterion criterion2 = new DichotomousCriterion();
criterion2.setId(2);
criterion2.setName("criterion2");
criterion2.setOption1("option1");
criterion2.setOption2("option2");
try {
DichotomousConstraint d1 = new DichotomousConstraint(Arrays.asList(new String[] {"option1"}));
d1.setId(1);
criterion2.addStrata(d1);
DichotomousConstraint d2 = new DichotomousConstraint(Arrays.asList(new String[] {"option2"}));
d2.setId(2);
criterion2.addStrata(d2);
} catch (ContraintViolatedException e) {
fail();
}
validTrial.addCriterion(criterion1);
validTrial.addCriterion(criterion2);
Pair<List<String>, List<String>> pair = validTrial.getAllStrataIdsAndNames();
assertEquals(8, pair.first().size());
assertEquals(8, pair.last().size());
Collections.sort(pair.first());
assertEquals("1__1_1;2_1;", pair.first().get(0));
assertEquals("1__1_1;2_2;", pair.first().get(1));
assertEquals("1__1_2;2_1;", pair.first().get(2));
assertEquals("1__1_2;2_2;", pair.first().get(3));
assertEquals("2__1_1;2_1;", pair.first().get(4));
assertEquals("2__1_1;2_2;", pair.first().get(5));
assertEquals("2__1_2;2_1;", pair.first().get(6));
assertEquals("2__1_2;2_2;", pair.first().get(7));
Collections.sort(pair.last());
assertEquals("site1 | criterion1_option1;criterion2_option1;", pair.last().get(0));
assertEquals("site1 | criterion1_option1;criterion2_option2;", pair.last().get(1));
assertEquals("site1 | criterion1_option2;criterion2_option1;", pair.last().get(2));
assertEquals("site1 | criterion1_option2;criterion2_option2;", pair.last().get(3));
assertEquals("site2 | criterion1_option1;criterion2_option1;", pair.last().get(4));
assertEquals("site2 | criterion1_option1;criterion2_option2;", pair.last().get(5));
assertEquals("site2 | criterion1_option2;criterion2_option1;", pair.last().get(6));
assertEquals("site2 | criterion1_option2;criterion2_option2;", pair.last().get(7));
}
@Test
public void testChartSubGroups() {
authenticatAsPrincipalInvestigator();
validTrial.setStartDate(new GregorianCalendar(2009, 0, 1));
validTrial.setEndDate(new GregorianCalendar(2010, 11, 1));
int blocksize = 4;
int randomizations = 240;
TreatmentArm arm1 = new TreatmentArm();
arm1.setPlannedSubjects(randomizations / 2);
arm1.setName("arm1");
arm1.setTrial(validTrial);
TreatmentArm arm2 = new TreatmentArm();
arm2.setPlannedSubjects(randomizations / 2);
arm2.setName("arm2");
arm2.setTrial(validTrial);
List<TreatmentArm> arms = new ArrayList<TreatmentArm>();
arms.add(arm1);
arms.add(arm2);
validTrial.setTreatmentArms(arms);
DichotomousCriterion cr = new DichotomousCriterion();
cr.setOption1("1");
cr.setOption2("2");
DichotomousCriterion cr1 = new DichotomousCriterion();
cr1.setOption1("1");
cr1.setOption2("2");
DichotomousCriterion cr2 = new DichotomousCriterion();
cr2.setOption1("1");
cr2.setOption2("2");
try {
cr.addStrata(new DichotomousConstraint(Arrays.asList(new String[] {"1"})));
cr.addStrata(new DichotomousConstraint(Arrays.asList(new String[] {"2"})));
cr1.addStrata(new DichotomousConstraint(Arrays.asList(new String[] {"1"})));
cr1.addStrata(new DichotomousConstraint(Arrays.asList(new String[] {"2"})));
cr2.addStrata(new DichotomousConstraint(Arrays.asList(new String[] {"1"})));
cr2.addStrata(new DichotomousConstraint(Arrays.asList(new String[] {"2"})));
validTrial.addCriterion(cr);
validTrial.addCriterion(cr1);
validTrial.addCriterion(cr2);
} catch (ContraintViolatedException e) {
BoxedException.throwBoxed(e);
}
BlockRandomizationConfig config = new BlockRandomizationConfig();
config.setMaximum(blocksize);
config.setMinimum(blocksize);
validTrial.setRandomizationConfiguration(config);
trialService.create(validTrial);
assertTrue(validTrial.getId() > 0);
assertEquals(2, validTrial.getTreatmentArms().size());
authenticatAsInvestigator();
for (int i = 0; i < randomizations; i++) {
TrialSubject subject = new TrialSubject();
subject.setIdentification("identification" + i);
subject.setTrialSite(validTrial.getLeadingSite());
SubjectProperty<Serializable> subprob =
new SubjectProperty<Serializable>(validTrial.getCriteria().get(0));
SubjectProperty<Serializable> subprob1 =
new SubjectProperty<Serializable>(validTrial.getCriteria().get(1));
SubjectProperty<Serializable> subprob2 =
new SubjectProperty<Serializable>(validTrial.getCriteria().get(2));
try {
if ((new Random()).nextInt(2) == 0) {
subprob.setValue(cr.getOption1());
} else {
subprob.setValue(cr.getOption2());
}
if ((new Random()).nextInt(2) == 0) {
subprob1.setValue(cr1.getOption1());
} else {
subprob1.setValue(cr1.getOption2());
}
if ((new Random()).nextInt(2) == 0) {
subprob2.setValue(cr2.getOption1());
} else {
subprob2.setValue(cr2.getOption2());
}
} catch (ContraintViolatedException e) {
BoxedException.throwBoxed(e);
}
Set<SubjectProperty<?>> proberties = new HashSet<SubjectProperty<?>>();
proberties.add(subprob);
proberties.add(subprob1);
proberties.add(subprob2);
subject.setProperties(proberties);
trialService.randomize(validTrial, subject);
subject.setCreatedAt(new GregorianCalendar(2009 + (i >= 120 ? 1 : 0), i % 12, 1));
sessionFactory.getCurrentSession().update(subject);
}
ChartData data = chartsService.generateRecruitmentChartFactors(validTrial);
assertEquals(8, data.getData().size());
assertEquals(8, data.getData().get(0).length);
assertEquals(8, data.getXLabels().size());
}
