@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
FileParameter fileP = new FileParameter(FILE_ID, FileParameter.FileType.INPUT_FILE);
if (config.grab(fileP)) {
file = fileP.getValue();
}
PatternParameter idP = new PatternParameter(ID_ID, ID_PATTERN_DEFAULT);
if (config.grab(idP)) {
idpattern = idP.getValue();
}
PatternParameter scoreP = new PatternParameter(SCORE_ID);
if (config.grab(scoreP)) {
scorepattern = scoreP.getValue();
}
Flag inverstedF = new Flag(INVERTED_ID);
if (config.grab(inverstedF)) {
inverted = inverstedF.getValue();
}
ObjectParameter<ScalingFunction> scalingP =
new ObjectParameter<>(SCALING_ID, ScalingFunction.class, IdentityScaling.class);
if (config.grab(scalingP)) {
scaling = scalingP.instantiateClass(config);
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
final FileParameter MATRIX_PARAM =
new FileParameter(MATRIX_ID, FileParameter.FileType.INPUT_FILE);
if (config.grab(MATRIX_PARAM)) {
matrixfile = MATRIX_PARAM.getValue();
}
final ObjectParameter<DistanceParser> PARSER_PARAM =
new ObjectParameter<>(PARSER_ID, DistanceParser.class, AsciiDistanceParser.class);
if (config.grab(PARSER_PARAM)) {
parser = PARSER_PARAM.instantiateClass(config);
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
input = config.tryInstantiate(InputStep.class);
// Distance function parameter
final ObjectParameter<DistanceFunction<O>> dpar =
new ObjectParameter<>(DISTANCE_ID, DistanceFunction.class);
if (config.grab(dpar)) {
distance = dpar.instantiateClass(config);
}
final IntParameter kpar = new IntParameter(K_ID);
kpar.addConstraint(CommonConstraints.GREATER_EQUAL_ONE_INT);
if (config.grab(kpar)) {
k = kpar.intValue();
}
// Output file parameter
final FileParameter cpar = new FileParameter(CACHE_ID, FileParameter.FileType.OUTPUT_FILE);
if (config.grab(cpar)) {
out = cpar.getValue();
}
}