protected void process(ClassDoc clss) {
   writer.println("");
   writer.println("## *" + clss.simpleTypeName() + "*");
   writer.println(clss.commentText());
   writer.println("");
   if (clss.isEnum()) {
     for (FieldDoc field : clss.enumConstants()) {
       printEnumConstant(field);
     }
     writer.println("");
     for (MethodDoc method : clss.methods(false)) {
       printMethod(method);
     }
   } else if (clss.isInterface()) {
     /*
     for (ClassDoc subClass : getDerivedClassessubclasses( clss ))
     {
         printSubClass(subClass);
     }
     */
   } else {
     for (FieldDoc field : clss.fields(false)) {
       printField(field);
     }
     for (MethodDoc method : clss.methods(false)) {
       printMethod(method);
     }
   }
 }
 protected void write(OutputStream o, ClassDoc clazz) throws ClassNotFoundException {
   String cname = mangleClassName(clazz.qualifiedName());
   PrintWriter pw = wrapWriter(o);
   fields = clazz.fields();
   methods = clazz.methods();
   generateDeclsForClass(pw, clazz, cname);
 }
  /**
   * Prints dependencies recovered from the methods of a class. A dependency is inferred only if
   * another relation between the two classes is not already in the graph.
   *
   * @param classes
   */
  public void printInferredDependencies(ClassDoc c) {
    Options opt = optionProvider.getOptionsFor(c);

    String sourceName = c.toString();
    if (hidden(c)) return;

    Set<Type> types = new HashSet<Type>();
    // harvest method return and parameter types
    for (MethodDoc method : filterByVisibility(c.methods(false), opt.inferDependencyVisibility)) {
      types.add(method.returnType());
      for (Parameter parameter : method.parameters()) {
        types.add(parameter.type());
      }
    }
    // and the field types
    if (!opt.inferRelationships) {
      for (FieldDoc field : filterByVisibility(c.fields(false), opt.inferDependencyVisibility)) {
        types.add(field.type());
      }
    }
    // see if there are some type parameters
    if (c.asParameterizedType() != null) {
      ParameterizedType pt = c.asParameterizedType();
      types.addAll(Arrays.asList(pt.typeArguments()));
    }
    // see if type parameters extend something
    for (TypeVariable tv : c.typeParameters()) {
      if (tv.bounds().length > 0) types.addAll(Arrays.asList(tv.bounds()));
    }

    // and finally check for explicitly imported classes (this
    // assumes there are no unused imports...)
    if (opt.useImports) types.addAll(Arrays.asList(c.importedClasses()));

    // compute dependencies
    for (Type type : types) {
      // skip primitives and type variables, as well as dependencies
      // on the source class
      if (type.isPrimitive()
          || type instanceof WildcardType
          || type instanceof TypeVariable
          || c.toString().equals(type.asClassDoc().toString())) continue;

      // check if the destination is excluded from inference
      ClassDoc fc = type.asClassDoc();
      if (hidden(fc)) continue;

      // check if source and destination are in the same package and if we are allowed
      // to infer dependencies between classes in the same package
      if (!opt.inferDepInPackage && c.containingPackage().equals(fc.containingPackage())) continue;

      // if source and dest are not already linked, add a dependency
      RelationPattern rp = getClassInfo(sourceName).getRelation(fc.toString());
      if (rp == null || rp.matchesOne(new RelationPattern(RelationDirection.OUT))) {
        relation(opt, RelationType.DEPEND, c, fc, "", "", "");
      }
    }
  }
 /**
  * Build the serial UID information for the given class.
  *
  * @param node the XML element that specifies which components to document
  * @param classTree content tree to which the serial UID information will be added
  */
 public void buildSerialUIDInfo(XMLNode node, Content classTree) {
   Content serialUidTree = writer.getSerialUIDInfoHeader();
   FieldDoc[] fields = currentClass.fields(false);
   for (int i = 0; i < fields.length; i++) {
     if (fields[i].name().equals("serialVersionUID")
         && fields[i].constantValueExpression() != null) {
       writer.addSerialUIDInfo(
           SERIAL_VERSION_UID_HEADER, fields[i].constantValueExpression(), serialUidTree);
       break;
     }
   }
   classTree.addContent(serialUidTree);
 }
  private int doTwoWordFields(
      FieldDefsRes res, ClassDoc clazz, int offset, String cname, boolean padWord)
      throws ClassNotFoundException {
    boolean first = true;
    FieldDoc[] fields = clazz.fields();

    for (int i = 0; i < fields.length; i++) {
      FieldDoc field = fields[i];
      String tc = field.type().typeName();
      boolean twoWords = (tc.equals("long") || tc.equals("double"));
      if (twoWords && doField(res, field, cname, first && padWord)) {
        offset += 8;
        first = false;
      }
    }
    return offset;
  }
  protected FieldDefsRes fieldDefs(ClassDoc clazz, String cname, boolean bottomMost)
      throws ClassNotFoundException {
    FieldDefsRes res;
    int offset;
    boolean didTwoWordFields = false;
    ClassDoc superclazz = clazz.superclass();

    if (superclazz != null) {
      String supername = superclazz.qualifiedName();
      res = new FieldDefsRes(clazz, fieldDefs(superclazz, cname, false), bottomMost);
      offset = res.parent.byteSize;
    } else {
      res = new FieldDefsRes(clazz, null, bottomMost);
      offset = 0;
    }

    FieldDoc[] fields = clazz.fields();

    for (int i = 0; i < fields.length; i++) {
      FieldDoc field = fields[i];

      if (doubleAlign && !didTwoWordFields && (offset % 8) == 0) {
        offset = doTwoWordFields(res, clazz, offset, cname, false);
        didTwoWordFields = true;
      }

      String tc = field.type().typeName();
      boolean twoWords = (tc.equals("long") || tc.equals("double"));

      if (!doubleAlign || !twoWords) {
        if (doField(res, field, cname, false)) offset += 4;
      }
    }

    if (doubleAlign && !didTwoWordFields) {
      if ((offset % 8) != 0) offset += 4;
      offset = doTwoWordFields(res, clazz, offset, cname, true);
    }

    res.byteSize = offset;
    return res;
  }
 /**
  * Build the sorted list of all the deprecated APIs in this run. Build separate lists for
  * deprecated packages, classes, constructors, methods and fields.
  *
  * @param configuration the current configuration of the doclet.
  */
 private void buildDeprecatedAPIInfo(Configuration configuration) {
   PackageDoc[] packages = configuration.packages;
   PackageDoc pkg;
   for (int c = 0; c < packages.length; c++) {
     pkg = packages[c];
     if (Util.isDeprecated(pkg)) {
       getList(PACKAGE).add(pkg);
     }
   }
   ClassDoc[] classes = configuration.root.classes();
   for (int i = 0; i < classes.length; i++) {
     ClassDoc cd = classes[i];
     if (Util.isDeprecated(cd)) {
       if (cd.isOrdinaryClass()) {
         getList(CLASS).add(cd);
       } else if (cd.isInterface()) {
         getList(INTERFACE).add(cd);
       } else if (cd.isException()) {
         getList(EXCEPTION).add(cd);
       } else if (cd.isEnum()) {
         getList(ENUM).add(cd);
       } else if (cd.isError()) {
         getList(ERROR).add(cd);
       } else if (cd.isAnnotationType()) {
         getList(ANNOTATION_TYPE).add(cd);
       }
     }
     composeDeprecatedList(getList(FIELD), cd.fields());
     composeDeprecatedList(getList(METHOD), cd.methods());
     composeDeprecatedList(getList(CONSTRUCTOR), cd.constructors());
     if (cd.isEnum()) {
       composeDeprecatedList(getList(ENUM_CONSTANT), cd.enumConstants());
     }
     if (cd.isAnnotationType()) {
       composeDeprecatedList(getList(ANNOTATION_TYPE_MEMBER), ((AnnotationTypeDoc) cd).elements());
     }
   }
   sortDeprecatedLists();
 }
  /**
   * Prints associations recovered from the fields of a class. An association is inferred only if
   * another relation between the two classes is not already in the graph.
   *
   * @param classes
   */
  public void printInferredRelations(ClassDoc c) {
    Options opt = optionProvider.getOptionsFor(c);

    // check if the source is excluded from inference
    if (hidden(c)) return;

    for (FieldDoc field : c.fields(false)) {
      if (hidden(field)) continue;

      // skip statics
      if (field.isStatic()) continue;

      // skip primitives
      FieldRelationInfo fri = getFieldRelationInfo(field);
      if (fri == null) continue;

      // check if the destination is excluded from inference
      if (hidden(fri.cd)) continue;

      String destAdornment = fri.multiple ? "*" : "";
      relation(opt, opt.inferRelationshipType, c, fri.cd, "", "", destAdornment);
    }
  }
  /**
   * Parses the data for a class type definition
   *
   * @param docClass
   * @return
   */
  protected static Class ParseClass(ClassDoc docClass) {
    assert (docClass != null);

    Class xmlClass = new Class();

    // illegal use of this class.
    assert (xmlClass != null);

    xmlClass.name = docClass.name();
    xmlClass.qualifiedName = docClass.qualifiedName();
    xmlClass.isSerializable = docClass.isSerializable();
    xmlClass.isExternalizable = docClass.isExternalizable();
    xmlClass.isAbstract = docClass.isAbstract();
    xmlClass.isException = docClass.isException();
    xmlClass.isError = docClass.isError();
    xmlClass.comment = docClass.commentText();
    xmlClass.scope = DetermineScope(docClass);
    xmlClass.isIncluded = docClass.isIncluded();
    xmlClass.typeVariables =
        ParseTypeVariables(docClass.typeParameters(), docClass.typeParamTags());
    Type superClassType = docClass.superclassType();
    if (superClassType != null) {
      xmlClass.superClass = ParseType(superClassType);
    }

    Type[] interfaces = docClass.interfaceTypes();

    ArrayList<TypeInfo> interfaceTypeNames = new ArrayList<TypeInfo>();
    if (interfaces != null && interfaces.length > 0) {
      for (Type interfaceType : interfaces) {
        interfaceTypeNames.add(ParseType(interfaceType));
      }

      xmlClass.interfaces = interfaceTypeNames.toArray(new TypeInfo[] {});
    }

    ConstructorDoc[] constructors = docClass.constructors();

    if (constructors != null && constructors.length > 0) {
      ArrayList<Constructor> constructorList = new ArrayList<Constructor>();

      for (ConstructorDoc constructor : constructors) {
        constructorList.add(ParseConstructor(constructor));
      }

      xmlClass.constructors = constructorList.toArray(new Constructor[] {});
    } else {
      log.debug("No constructors in class: " + docClass.name());
    }

    MethodDoc[] methods = docClass.methods();

    if (methods != null && methods.length > 0) {
      ArrayList<Method> methodList = new ArrayList<Method>();

      for (MethodDoc method : methods) {
        methodList.add(ParseMethod(method));
      }

      xmlClass.methods = methodList.toArray(new Method[] {});
    } else {
      log.debug("No methods in class: " + docClass.name());
    }

    FieldDoc[] fields = docClass.fields();

    if (fields != null && fields.length > 0) {
      ArrayList<Field> fieldList = new ArrayList<Field>();

      for (FieldDoc field : fields) {
        fieldList.add(ParseField(field));
      }

      xmlClass.fields = fieldList.toArray(new Field[] {});
    }

    xmlClass.annotationInstances =
        ParseAnnotationInstances(docClass.annotations(), docClass.qualifiedName());
    return xmlClass;
  }
 public static boolean start(RootDoc root) {
   ClassDoc cd = root.classes()[0];
   FieldDoc fd = cd.fields()[0];
   fd.firstSentenceTags();
   return true;
 }
  private void walkFormParameter(ClassDoc formDoc) {
    // walk all fields
    for (FieldDoc field : formDoc.fields(false)) {
      final AnnotationDesc pathParamAnnotation = Utils.findAnnotation(field, PathParam.class);
      if (pathParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(pathParamAnnotation);
        pathParameters.add(
            new FormFieldParameter(field, pathParamAnnotation, MethodParameterType.Path));
        continue;
      }
      final AnnotationDesc matrixParamAnnotation = Utils.findAnnotation(field, MatrixParam.class);
      if (matrixParamAnnotation != null) {
        matrixParameters.add(
            new FormFieldParameter(field, matrixParamAnnotation, MethodParameterType.Matrix));
        continue;
      }
      final AnnotationDesc queryParamAnnotation = Utils.findAnnotation(field, QueryParam.class);
      if (queryParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(queryParamAnnotation);
        queryParameters.add(
            new FormFieldParameter(field, queryParamAnnotation, MethodParameterType.Query));
        continue;
      }
      final AnnotationDesc headerParamAnnotation = Utils.findAnnotation(field, HeaderParam.class);
      if (headerParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(headerParamAnnotation);
        headerParameters.add(
            new FormFieldParameter(field, headerParamAnnotation, MethodParameterType.Header));
        continue;
      }
      final AnnotationDesc cookieParamAnnotation = Utils.findAnnotation(field, CookieParam.class);
      if (cookieParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(cookieParamAnnotation);
        cookieParameters.add(
            new FormFieldParameter(field, cookieParamAnnotation, MethodParameterType.Cookie));
        continue;
      }
      final AnnotationDesc formParamAnnotation = Utils.findAnnotation(field, FormParam.class);
      if (formParamAnnotation != null) {
        formParameters.add(
            new FormFieldParameter(field, formParamAnnotation, MethodParameterType.Form));
        continue;
      }
      // Recurse into the embedded @Form field
      if (formClass != null) {
        final AnnotationDesc formAnnotation = Utils.findAnnotation(field, formClass);
        if (formAnnotation != null) {
          walkFormParameter(field.type().asClassDoc());
          continue;
        }
      }

      final AnnotationDesc contextAnnotation = Utils.findAnnotation(field, Context.class);
      if (contextAnnotation == null) {
        this.inputParameter = new FormFieldParameter(field, null, MethodParameterType.Input);
        continue;
      }
    }
    // and methods
    for (MethodDoc method : formDoc.methods(false)) {
      if (!method.returnType().qualifiedTypeName().equals("void")
          || method.parameters().length != 1
          || !method.name().startsWith("set")) continue;
      Parameter parameter = method.parameters()[0];
      final AnnotationDesc pathParamAnnotation =
          Utils.findParameterAnnotation(method, parameter, 0, PathParam.class);
      if (pathParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(pathParamAnnotation);
        pathParameters.add(
            new FormMethodParameter(method, pathParamAnnotation, MethodParameterType.Path));
        continue;
      }
      final AnnotationDesc matrixParamAnnotation =
          Utils.findParameterAnnotation(method, parameter, 0, MatrixParam.class);
      if (matrixParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(matrixParamAnnotation);
        matrixParameters.add(
            new FormMethodParameter(method, matrixParamAnnotation, MethodParameterType.Matrix));
        continue;
      }
      final AnnotationDesc queryParamAnnotation =
          Utils.findParameterAnnotation(method, parameter, 0, QueryParam.class);
      if (queryParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(queryParamAnnotation);
        queryParameters.add(
            new FormMethodParameter(method, queryParamAnnotation, MethodParameterType.Query));
        continue;
      }
      final AnnotationDesc headerParamAnnotation =
          Utils.findParameterAnnotation(method, parameter, 0, HeaderParam.class);
      if (headerParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(headerParamAnnotation);
        headerParameters.add(
            new FormMethodParameter(method, headerParamAnnotation, MethodParameterType.Header));
        continue;
      }
      final AnnotationDesc cookieParamAnnotation =
          Utils.findParameterAnnotation(method, parameter, 0, CookieParam.class);
      if (cookieParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(cookieParamAnnotation);
        cookieParameters.add(
            new FormMethodParameter(method, cookieParamAnnotation, MethodParameterType.Cookie));
        continue;
      }
      final AnnotationDesc formParamAnnotation =
          Utils.findParameterAnnotation(method, parameter, 0, FormParam.class);
      if (formParamAnnotation != null) {
        String name = (String) Utils.getAnnotationValue(formParamAnnotation);
        formParameters.add(
            new FormMethodParameter(method, formParamAnnotation, MethodParameterType.Form));
        continue;
      }
      // I'm not sure if @Form can be used on setter methods on an @Form field, but just in case...
      if (formClass != null) {
        // recurse into @Form parameters
        final AnnotationDesc formAnnotation =
            Utils.findParameterAnnotation(method, parameter, 0, formClass);
        if (formAnnotation != null) {
          walkFormParameter(parameter.type().asClassDoc());
          continue;
        }
      }
      final AnnotationDesc contextAnnotation =
          Utils.findParameterAnnotation(method, parameter, 0, Context.class);
      if (contextAnnotation == null) {
        this.inputParameter = new FormMethodParameter(method, null, MethodParameterType.Input);
      }
    }
  }
  /**
   * Prints the class if needed.
   *
   * <p>A class is a rootClass if it's included among the classes returned by RootDoc.classes(),
   * this information is used to properly compute relative links in diagrams for UMLDoc
   */
  public String printClass(ClassDoc c, boolean rootClass) {
    ClassInfo ci;
    boolean toPrint;
    Options opt = optionProvider.getOptionsFor(c);

    String className = c.toString();
    if ((ci = getClassInfo(className)) != null) toPrint = !ci.nodePrinted;
    else {
      toPrint = true;
      ci = newClassInfo(className, true, hidden(c));
    }
    if (toPrint && !hidden(c) && (!c.isEnum() || opt.showEnumerations)) {
      // Associate classname's alias
      String r = className;
      w.println("\t// " + r);
      // Create label
      w.print("\t" + ci.name + " [label=");

      boolean showMembers =
          (opt.showAttributes && c.fields().length > 0)
              || (c.isEnum() && opt.showEnumConstants && c.enumConstants().length > 0)
              || (opt.showOperations && c.methods().length > 0)
              || (opt.showConstructors && c.constructors().length > 0);

      externalTableStart(opt, c.qualifiedName(), classToUrl(c, rootClass));

      // Calculate the number of innerTable rows we will emmit
      int nRows = 1;
      if (showMembers) {
        if (opt.showAttributes) nRows++;
        else if (!c.isEnum() && (opt.showConstructors || opt.showOperations)) nRows++;
        if (c.isEnum() && opt.showEnumConstants) nRows++;
        if (!c.isEnum() && (opt.showConstructors || opt.showOperations)) nRows++;
      }

      firstInnerTableStart(opt, nRows);
      if (c.isInterface()) tableLine(Align.CENTER, guilWrap(opt, "interface"));
      if (c.isEnum()) tableLine(Align.CENTER, guilWrap(opt, "enumeration"));
      stereotype(opt, c, Align.CENTER);
      Font font = c.isAbstract() && !c.isInterface() ? Font.CLASS_ABSTRACT : Font.CLASS;
      String qualifiedName = qualifiedName(opt, r);
      int startTemplate = qualifiedName.indexOf('<');
      int idx = 0;
      if (startTemplate < 0) idx = qualifiedName.lastIndexOf('.');
      else idx = qualifiedName.lastIndexOf('.', startTemplate);
      if (opt.showComment)
        tableLine(Align.LEFT, htmlNewline(escape(c.commentText())), opt, Font.CLASS);
      else if (opt.postfixPackage && idx > 0 && idx < (qualifiedName.length() - 1)) {
        String packageName = qualifiedName.substring(0, idx);
        String cn = className.substring(idx + 1);
        tableLine(Align.CENTER, escape(cn), opt, font);
        tableLine(Align.CENTER, packageName, opt, Font.PACKAGE);
      } else {
        tableLine(Align.CENTER, escape(qualifiedName), opt, font);
      }
      tagvalue(opt, c);
      firstInnerTableEnd(opt, nRows);

      /*
       * Warning: The boolean expressions guarding innerTableStart()
       * in this block, should match those in the code block above
       * marked: "Calculate the number of innerTable rows we will emmit"
       */
      if (showMembers) {
        if (opt.showAttributes) {
          innerTableStart();
          FieldDoc[] fields = c.fields();
          // if there are no fields, print an empty line to generate proper HTML
          if (fields.length == 0) tableLine(Align.LEFT, "");
          else attributes(opt, c.fields());
          innerTableEnd();
        } else if (!c.isEnum() && (opt.showConstructors || opt.showOperations)) {
          // show an emtpy box if we don't show attributes but
          // we show operations
          innerTableStart();
          tableLine(Align.LEFT, "");
          innerTableEnd();
        }
        if (c.isEnum() && opt.showEnumConstants) {
          innerTableStart();
          FieldDoc[] ecs = c.enumConstants();
          // if there are no constants, print an empty line to generate proper HTML
          if (ecs.length == 0) {
            tableLine(Align.LEFT, "");
          } else {
            for (FieldDoc fd : c.enumConstants()) {
              tableLine(Align.LEFT, fd.name());
            }
          }
          innerTableEnd();
        }
        if (!c.isEnum() && (opt.showConstructors || opt.showOperations)) {
          innerTableStart();
          boolean printedLines = false;
          if (opt.showConstructors) printedLines |= operations(opt, c.constructors());
          if (opt.showOperations) printedLines |= operations(opt, c.methods());

          if (!printedLines)
            // if there are no operations nor constructors,
            // print an empty line to generate proper HTML
            tableLine(Align.LEFT, "");

          innerTableEnd();
        }
      }
      externalTableEnd();
      w.print(", URL=\"" + classToUrl(c, rootClass) + "\"");
      nodeProperties(opt);

      // If needed, add a note for this node
      int ni = 0;
      for (Tag t : c.tags("note")) {
        String noteName = "n" + ni + "c" + ci.name;
        w.print("\t// Note annotation\n");
        w.print("\t" + noteName + " [label=");
        externalTableStart(
            UmlGraph.getCommentOptions(), c.qualifiedName(), classToUrl(c, rootClass));
        innerTableStart();
        tableLine(
            Align.LEFT, htmlNewline(escape(t.text())), UmlGraph.getCommentOptions(), Font.CLASS);
        innerTableEnd();
        externalTableEnd();
        nodeProperties(UmlGraph.getCommentOptions());
        w.print("\t" + noteName + " -> " + relationNode(c) + "[arrowhead=none];\n");
        ni++;
      }
      ci.nodePrinted = true;
    }
    return ci.name;
  }