public void TestSafePrivateGEMRRelated_CreatorFromList() throws Exception {
{
AttributeList list = new AttributeList();
{
Attribute a = new LongStringAttribute(new AttributeTag(0x0019, 0x0010));
a.addValue("GEMS_ACQU_01");
list.put(a);
}
assertTrue(
"Internal Pulse Sequence Name is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(new AttributeTag(0x0019, 0x109E), list));
}
{
AttributeList list = new AttributeList();
{
Attribute a = new LongStringAttribute(new AttributeTag(0x0025, 0x0010));
a.addValue("GEMS_SERS_01");
list.put(a);
}
assertTrue(
"Images In Series is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(new AttributeTag(0x0025, 0x1007), list));
}
{
AttributeList list = new AttributeList();
{
Attribute a = new LongStringAttribute(new AttributeTag(0x0043, 0x0010));
a.addValue("GEMS_PARM_01");
list.put(a);
}
assertTrue(
"Scanner Table Entry + Gradient Coil Selected",
ClinicalTrialsAttributes.isSafePrivateAttribute(new AttributeTag(0x0043, 0x106F), list));
}
}
public void TestSafePrivatePhilipsPETRelated_ScaleFactors_FromTag() throws Exception {
assertTrue(
"Checking SUV Factor is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(
"Philips PET Private Group", new AttributeTag(0x7053, 0x1000)));
assertTrue(
"Checking Activity Concentration Factor is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(
"Philips PET Private Group", new AttributeTag(0x7053, 0x1009)));
}
public void TestSafePrivatePhilipsPETRelated_ScaleFactors_FromList() throws Exception {
AttributeList list = new AttributeList();
{
Attribute a = new LongStringAttribute(new AttributeTag(0x7053, 0x0010));
a.addValue("Philips PET Private Group");
list.put(a);
}
assertTrue(
"Checking SUV Factor is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(new AttributeTag(0x7053, 0x1000), list));
assertTrue(
"Checking Activity Concentration Factor is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(new AttributeTag(0x7053, 0x1009), list));
}
public void TestSafePrivateGEMRRelated_FromTag() throws Exception {
assertTrue(
"Internal Pulse Sequence Name",
ClinicalTrialsAttributes.isSafePrivateAttribute(
"GEMS_ACQU_01", new AttributeTag(0x0019, 0x109E)));
assertTrue(
"Images In Series",
ClinicalTrialsAttributes.isSafePrivateAttribute(
"GEMS_SERS_01", new AttributeTag(0x0025, 0x1007)));
assertTrue(
"Scanner Table Entry + Gradient Coil Selected",
ClinicalTrialsAttributes.isSafePrivateAttribute(
"GEMS_PARM_01", new AttributeTag(0x0043, 0x106F)));
}
public void TestSafePrivateGEPACSRelated_CreatorFromList() throws Exception {
AttributeList list = new AttributeList();
{
Attribute a = new LongStringAttribute(new AttributeTag(0x0903, 0x0010));
a.addValue("GEIIS PACS");
list.put(a);
}
assertTrue(
"Checking Reject Image Flag is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(new AttributeTag(0x0903, 0x1010), list));
}
public void TestSafePrivateGEPACSRelated_AddedToList() throws Exception {
AttributeList list = new AttributeList();
{
Attribute a = new LongStringAttribute(new AttributeTag(0x0903, 0x0010));
a.addValue("GEIIS PACS");
list.put(a);
}
{
Attribute a = new UnsignedShortAttribute(new AttributeTag(0x0903, 0x1010));
a.addValue(0);
list.put(a);
}
list.removeUnsafePrivateAttributes();
assertTrue(
"Checking Creator is not removed", list.get(new AttributeTag(0x0903, 0x0010)) != null);
assertTrue(
"Checking Reject Image Flag is not removed",
ClinicalTrialsAttributes.isSafePrivateAttribute(new AttributeTag(0x0903, 0x1010), list));
}
protected void doSomethingWithDicomFileOnMedia(String mediaFileName) {
// logLn("OurFirstPassMediaImporter.doSomethingWithDicomFile(): "+mediaFileName);
try {
DicomInputStream i = new DicomInputStream(new File(mediaFileName));
AttributeList list = new AttributeList();
list.read(i);
i.close();
String sopInstanceUID =
Attribute.getSingleStringValueOrEmptyString(list, TagFromName.SOPInstanceUID);
if (sopInstanceUID.length() > 0) {
Group group = mapOfSOPInstanceUIDToGroup.get(sopInstanceUID);
// System.err.println("group = "+group);
// System.err.println("Groups size = "+groups.size());
if (group == null) {
if (groups.size() == 1) {
group = groups.toArray(singleGroupArray)[0];
} else {
throw new DicomException(
"Cannot merge context for second set if more than one group");
}
}
if (group != null) {
logLn("In group " + group.identity);
if (group.context != null) {
CompositeInstanceContext.removePatient(
list); // remove anything hanging around, such as empty attributes
list.putAll(
group.context
.getAttributeList()); // overwrite all patient context in list that was read
// in
} else {
throw new DicomException(
"Missing group context for SOPInstanceUID on second pass"); // should not be
// possible
}
ClinicalTrialsAttributes.addContributingEquipmentSequence(
list,
true,
new CodedSequenceItem("109103", "DCM", "Modifying Equipment"),
"PixelMed", // Manufacturer
"PixelMed", // Institution Name
"Software Development", // Institutional Department Name
"Bangor, PA", // Institution Address
null, // Station Name
"com.pixelmed.apps.MergeCompositeContext", // Manufacturer's Model Name
null, // Device Serial Number
"Vers. " + VersionAndConstants.getBuildDate(), // Software Version(s)
"Merged patient context");
list.removeGroupLengthAttributes();
list.removeMetaInformationHeaderAttributes();
list.remove(TagFromName.DataSetTrailingPadding);
FileMetaInformation.addFileMetaInformation(
list, TransferSyntax.ExplicitVRLittleEndian, ourAETitle);
File dstFile =
new File(
dstFolderName,
MoveDicomFilesIntoHierarchy.makeHierarchicalPathFromAttributes(list));
if (dstFile.exists()) {
throw new DicomException(
"\""
+ mediaFileName
+ "\": new file \""
+ dstFile
+ "\" already exists - not overwriting");
} else {
File dstParentDirectory = dstFile.getParentFile();
if (!dstParentDirectory.exists()) {
if (!dstParentDirectory.mkdirs()) {
throw new DicomException(
"\""
+ mediaFileName
+ "\": parent directory creation failed for \""
+ dstFile
+ "\"");
}
}
logLn("Writing with new context file " + dstFile);
list.write(dstFile, TransferSyntax.ExplicitVRLittleEndian, true, true);
}
} else {
throw new DicomException(
"Missing group for SOPInstanceUID on second pass"); // should not be possible for
// single set case
}
} else {
throw new DicomException("Missing SOPInstanceUID");
}
} catch (Exception e) {
logLn("Error: File " + mediaFileName + " exception " + e);
}
}
public void TestSafePrivateGEPACSRelated_FromTag() throws Exception {
assertTrue(
"Checking Reject Image Flag is safe",
ClinicalTrialsAttributes.isSafePrivateAttribute(
"GEIIS PACS", new AttributeTag(0x0903, 0x1010)));
}