private AbstractDataTable createTable() {
DataTable data = DataTable.create();
data.addColumn(ColumnType.STRING, "Dating Activity");
data.addColumn(ColumnType.NUMBER, "Dating Time");
data.addRows(2);
data.setValue(0, 0, "Dinner");
data.setValue(0, 1, 5);
data.setValue(1, 0, "Movie");
data.setValue(1, 1, "8");
return data;
}
private AbstractDataTable createScatterTable() {
int numRows = 20;
DataTable data = DataTable.create();
data.addColumn(AbstractDataTable.ColumnType.NUMBER, "X");
data.addColumn(AbstractDataTable.ColumnType.NUMBER, "Widget 1");
data.addColumn(AbstractDataTable.ColumnType.NUMBER, "Widget 2");
data.addRows(numRows);
Random randomGenerator = new Random();
for (int i = 0; i < numRows; i++) {
double sinResult = Math.sin(i / 5) * 0.25;
double cosResult = Math.cos(i / 25);
data.setValue(i, 0, randomGenerator.nextInt(100));
data.setValue(i, 1, sinResult);
data.setValue(i, 2, cosResult);
}
for (int i = 0; i < numRows; i++) {
double sinResult = Math.sin(i / 25);
double cosResult = Math.cos(i / 10) * 0.5;
data.setValue(i, 0, randomGenerator.nextInt(100));
data.setValue(i, 1, sinResult);
data.setValue(i, 2, cosResult);
}
// DataTable data = DataTable.create();
// data.addColumn(AbstractDataTable.ColumnType.NUMBER, "Sugar");
// data.addColumn(AbstractDataTable.ColumnType.NUMBER, "Calories");
// data.addColumn(AbstractDataTable.ColumnType.NUMBER, "Salt");
// data.addRows(4);
// data.setValue(0, 0, 20);
// data.setValue(0, 1, 11);
// data.setValue(0, 2, 30);
// data.setValue(1, 0, 30);
// data.setValue(1, 1, 10);
// data.setValue(1, 2, 20);
// data.setValue(2, 0, 27);
// data.setValue(2, 1, 2);
// data.setValue(2, 2, 34);
// data.setValue(3, 0, 22);
// data.setValue(3, 1, 2);
// data.setValue(3, 1, 9);
return data;
}
private AbstractDataTable createTable(String[][] qdata) {
DataTable data = DataTable.create();
data.addColumn(AbstractDataTable.ColumnType.STRING, qdata[0][0]);
data.addColumn(AbstractDataTable.ColumnType.NUMBER, qdata[0][1]);
data.addRows(qdata.length - 1);
for (int i = 1; i < qdata.length; i++) {
if (qdata[i][1] != null) {
data.setValue(i - 1, 0, qdata[i][0]);
data.setValue(i - 1, 1, Double.parseDouble(qdata[i][1]));
}
}
return data;
}
private AbstractDataTable createTable(Collection<Course> courses) {
data = DataTable.create();
data.addColumn(ColumnType.STRING, "Course");
data.addColumn(ColumnType.NUMBER, "Year");
data.addColumn(ColumnType.NUMBER, "Semester");
data.addColumn(ColumnType.STRING, "Activity");
data.addColumn(ColumnType.NUMBER, "Documents");
for (Course course : courses) {
for (WritingActivity writingActivity : course.getWritingActivities()) {
data.addRows(1);
data.setValue(data.getNumberOfRows() - 1, 0, course.getName());
data.setValue(data.getNumberOfRows() - 1, 1, course.getYear());
data.setValue(data.getNumberOfRows() - 1, 2, course.getSemester());
data.setValue(
data.getNumberOfRows() - 1,
3,
writingActivity.getName() + " (" + writingActivity.getTutorial() + ")");
data.setValue(data.getNumberOfRows() - 1, 4, writingActivity.getEntries().size());
}
}
return data;
}
private DataTable getStatisticsData(List<Phenotype> phenotypes) {
DataTable data = DataTable.create();
data.addColumn(ColumnType.STRING, "Phenotype");
data.addColumn(ColumnType.NUMBER, "Values");
data.addColumn(ColumnType.NUMBER, "Datasets");
data.addColumn(ColumnType.NUMBER, "Transformations");
data.addColumn(ColumnType.NUMBER, "Results");
data.addRows(phenotypes.size());
for (int i = 0; i < phenotypes.size(); i++) {
Phenotype phenotype = phenotypes.get(i);
data.setValue(i, 0, phenotype.getName());
data.setValue(i, 1, phenotype.getNumValues());
data.setValue(i, 2, phenotype.getDatasets().size());
data.setValue(i, 3, phenotype.getTransformationCount());
data.setValue(i, 4, phenotype.getResultCount());
}
return data;
}
private DataTable getSingleHistogramDataTable(String env, Dataset.TYPE dataset) {
DataTable dataTable = DataTable.create();
dataTable.addColumn(ColumnType.STRING, "Phenotype Value", "x-axis");
dataTable.addColumn(ColumnType.NUMBER, "Frequency", "y-axis");
DataTable histogramDataTable = null;
if (dataset == Dataset.TYPE.bisulfite) histogramDataTable = bsHistogramDataTable;
else histogramDataTable = mRNAHistogramDataTable;
dataTable.addRows(histogramDataTable.getNumberOfRows());
for (int i = 0; i < histogramDataTable.getNumberOfRows(); i++) {
dataTable.setValue(i, 0, histogramDataTable.getValueString(i, 0));
dataTable.setValue(i, 1, histogramDataTable.getValueInt(i, (env.equals("T16C") ? 2 : 1)));
}
return dataTable;
}