Exemple #1
0
  public static void staticalFeature(String source, String dest) {
    BufferedReader bufferedReader = null;
    BufferedWriter bufferedWriter = null;

    if (!new File(source).exists()) {
      System.err.println("There is no such file.");
      return;
    }

    FileUtil.CompulsoryCreateFile(dest);

    try {
      bufferedReader = new BufferedReader(new FileReader(source));
      bufferedWriter = new BufferedWriter(new FileWriter(dest));
    } catch (FileNotFoundException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    } catch (IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    }

    Map<String, ArrayList<String>> featureHashMap = new HashMap<String, ArrayList<String>>();

    String line = null, feature = null, queryId = null;
    String[] mapElements = null;

    ArrayList<String> features = null;

    System.out.println("begin to reading ...");

    try {
      while ((line = bufferedReader.readLine()) != null) {
        mapElements = line.split(" ");

        feature = mapElements[0].substring(34);
        queryId = mapElements[1].substring(27);

        if (featureHashMap.containsKey(queryId)) {
          features = featureHashMap.get(queryId);
          if (!features.contains(feature)) features.add(feature);
        } else {
          features = new ArrayList<String>();
          if (features.add(feature)) featureHashMap.put(queryId, features);
          else {
            throw new Exception("add error");
          }
        }
      }
    } catch (IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    } catch (Exception e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    } finally {
      try {
        bufferedReader.close();
      } catch (IOException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
      }
    }

    String shortFeatures = null;
    Set<String> queryIds = featureHashMap.keySet();
    try {
      for (String qId : queryIds) {
        shortFeatures = "";
        for (String fea : featureHashMap.get(qId)) shortFeatures += fea.charAt(0);

        bufferedWriter.write(qId + "\t" + shortFeatures + "\n");
      }
    } catch (IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    } finally {
      try {
        bufferedWriter.flush();
        bufferedWriter.close();
      } catch (IOException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
      }
    }

    System.out.println("end to write...");
  }
Exemple #2
0
  public static void CountFeature(String source, String dest) {
    BufferedReader bufferedReader = null;
    BufferedWriter bufferedWriter = null;

    if (!new File(source).exists()) {
      System.err.println("There is no such file.");
      return;
    }

    FileUtil.CompulsoryCreateFile(dest);

    try {
      bufferedReader = new BufferedReader(new FileReader(source));
      bufferedWriter = new BufferedWriter(new FileWriter(dest));
    } catch (FileNotFoundException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    } catch (IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    }

    Map<String, Integer> faturesHashMap = new HashMap<String, Integer>();

    String line = null, features = null;
    Integer count = null;

    String[] mapElements = null;

    System.out.println("begin to reading ...");

    try {
      while ((line = bufferedReader.readLine()) != null) {
        mapElements = line.split("\t");

        features = mapElements[1];

        if (faturesHashMap.containsKey(features)) {
          count = faturesHashMap.get(features);
          faturesHashMap.put(features, new Integer(count + 1));
        } else {
          faturesHashMap.put(features, new Integer(1));
        }
      }
    } catch (IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    } finally {
      try {
        bufferedReader.close();
      } catch (IOException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
      }
    }

    Set<String> featureSet = faturesHashMap.keySet();
    try {
      for (String feature : featureSet) {
        bufferedWriter.write(feature + "\t" + faturesHashMap.get(feature) + "\n");
      }
    } catch (IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    } finally {
      try {
        bufferedWriter.flush();
        bufferedWriter.close();
      } catch (IOException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
      }
    }

    System.out.println("end to write...");
  }