private void addSampleCodeCriterion(Criteria criteria, String sampleCode) {
String[] sampleCodeTokens =
sampleCode.split(SampleIdentifier.CONTAINED_SAMPLE_CODE_SEPARARTOR_STRING);
if (sampleCodeTokens.length > 1) {
final String containerCode = sampleCodeTokens[0];
final String code = sampleCodeTokens[1];
criteria.add(Restrictions.eq("code", CodeConverter.tryToDatabase(code)));
criteria.createAlias("container", "c");
criteria.add(Restrictions.eq("c.code", CodeConverter.tryToDatabase(containerCode)));
} else {
criteria.add(Restrictions.eq("code", CodeConverter.tryToDatabase(sampleCode)));
criteria.add(Restrictions.isNull("container"));
}
}
// LockSampleModificationsInterceptor automatically obtains lock
private final void internalCreateSample(
final SamplePE sample,
final HibernateTemplate hibernateTemplate,
final ClassValidator<SamplePE> classValidator,
final boolean doLog) {
validatePE(sample, classValidator);
sample.setCode(CodeConverter.tryToDatabase(sample.getCode()));
hibernateTemplate.saveOrUpdate(sample);
if (doLog && operationLog.isInfoEnabled()) {
operationLog.info(String.format("ADD: sample '%s'.", sample));
}
}
private List<SamplePE> listByPropertyValue(
String queryFormat, String propertyCode, String propertyValue, GroupPE parent) {
String simplePropertyCode = CodeConverter.tryToDatabase(propertyCode);
boolean isInternalNamespace = CodeConverter.isInternalNamespace(propertyCode);
Object[] arguments = toArray(propertyValue, parent, simplePropertyCode, isInternalNamespace);
String queryPropertySimpleValue = String.format(queryFormat, "value");
List<SamplePropertyPE> properties1 =
cast(getHibernateTemplate().find(queryPropertySimpleValue, arguments));
String queryPropertyVocabularyTerm = String.format(queryFormat, "vocabularyTerm.code");
List<SamplePropertyPE> properties2 =
cast(getHibernateTemplate().find(queryPropertyVocabularyTerm, arguments));
properties1.addAll(properties2);
List<SamplePE> entities = extractEntities(properties1);
return entities;
}