/**
* this method assigns default fields to the first Condition created and added to the List
*
* @param firstCondition
*/
private void initFirstCondition(PlateCondition firstCondition) {
// set the name
firstCondition.setName("Condition " + ++conditionIndex);
// set the cell line
CellLine cellLine = new CellLine();
cellLine.setCellLineType(cellLineTypeBindingList.get(0));
cellLine.setSeedingDensity(50000);
cellLine.setSeedingTime("day -1");
cellLine.setGrowthMedium(mediumBindingList.get(0));
cellLine.setSerum(serumBindingList.get(0));
cellLine.setSerumConcentration(10.0);
firstCondition.setCellLine(cellLine);
cellLine.setPlateCondition(firstCondition);
// set the migration assay: Oris platform; matrix dimension: 2D
firstCondition.setAssay(assayEcmController.getAssay2DBindingList().get(0));
// create a new AssayMedium object and set its class members
AssayMedium assayMedium = new AssayMedium();
assayMedium.setMedium(
treatmentsController.getTreatmentsPanel().getAssayMediumComboBox().getItemAt(0).toString());
assayMedium.setSerum(serumBindingList.get(0));
assayMedium.setSerumConcentration(1.0);
assayMedium.setVolume(10.0);
firstCondition.setAssayMedium(assayMedium);
assayMedium.setPlateCondition(firstCondition);
// create a new ECM object and set its class members
Ecm ecm = new Ecm();
ecm.setEcmComposition(assayEcmController.getEcm2DCompositionBindingList().get(0));
ecm.setCoatingTemperature("RT");
ecm.setCoatingTime("60");
ecm.setConcentration(0.04);
ecm.setVolume(100.0);
ecm.setVolumeUnit("\u00B5" + "l");
ecm.setConcentrationUnit("mg/ml");
firstCondition.setEcm(ecm);
// set an empty collection of treatments
List<Treatment> treatmentList = new ArrayList<>();
firstCondition.setTreatmentList(treatmentList);
// set an empty collection of wells
List<Well> wellList = new ArrayList<>();
firstCondition.setWellList(wellList);
}
