public TissueLikeMembraneStructure(MembraneStructure membrane, Psystem psystem) {
super();
if (psystem == null) throw new NullPointerException();
this.psystem = psystem;
Iterator<? extends Membrane> it;
cells = new HashMap<String, List<TissueLikeMembrane>>();
cellsById = new LinkedHashMap<Integer, TissueLikeMembrane>();
if (membrane instanceof CellLikeSkinMembrane) {
CellLikeSkinMembrane clm = (CellLikeSkinMembrane) membrane;
it = clm.getChildMembranes().iterator();
String environmentLabel = clm.getLabel();
environment = new TissueLikeEnvironment(environmentLabel, this);
secureAdd(environment);
} else if (membrane instanceof TissueLikeMembraneStructure) {
TissueLikeMembraneStructure tls = (TissueLikeMembraneStructure) membrane;
environment = new TissueLikeEnvironment(tls.getEnvironmentLabel(), this);
environment.getMultiSet().addAll(tls.getEnvironment());
secureAdd(environment);
it = membrane.getAllMembranes().iterator();
} else throw new IllegalArgumentException("The membrane structure must be tissue-like");
while (it.hasNext()) {
Membrane m = it.next();
if (m.getLabel().equals(environment.getLabel())) {
if (membrane instanceof CellLikeSkinMembrane)
throw new IllegalArgumentException(
"The environment label cannot be used as membrane label");
} else add(new TissueLikeMembrane(m, this));
}
}
public String getEnvironmentLabel() {
return environment.getLabel();
}
public InfiniteMultiSet<String> getEnvironment() {
return (InfiniteMultiSet<String>) environment.getMultiSet();
}
