Exemple #1
0
  public void updateStatsSubmitUI() {

    File explist = new File(m_curSQExp + "/EXPLIST");
    File enterSQ = new File(m_curSQExp + "/tmpstudy/enterSQ");
    Map<String, String> titleToIdMap = getTitleToIdMap(explist, enterSQ);

    String curSampleDir = getDataDir(m_autodir);

    File acqlist = new File(m_archiveDir + "/" + curSampleDir + "/dirinfo/macdir/ACQlist");
    Map<String, String> expStats = getExpStats(acqlist);

    Set<String> titles = titleToIdMap.keySet();
    for (String title : titles) {
      String node = titleToIdMap.get(title);
      String status = expStats.get(title);
      if (status == null) {
        status = SQ_READY;
      } else if (status.equals(SQ_ACTIVE)) {
        status = SQ_EXECUTING;
      }
      m_studyQueue.processCommand(SET + " " + node + " " + ATTR_STATUS + " " + status);
    }
    // Set the parent title to show the current sample number
    //       m_studyQueue.processCommand(SET + " tmpstudy " + ATTR_TITLE
    //                                   + " \"Sample " + m_sampleNumber + "\"");
    //       m_studyQueue.processCommand(SET + " tmpstudy " + ATTR_TOOLTEXT
    //               + " \"\"");
  }
Exemple #2
0
 private SQNode getNodeInfoFromSQ(String nodeId) {
   SQNode nodeInfo = null;
   ProtocolBuilder mgr = m_studyQueue.getMgr();
   VElement velem = mgr.getElement(nodeId);
   if (velem != null) {
     nodeInfo = new SQNode();
     for (String attr : SQNode.getStandardAttributes()) {
       String value = mgr.getAttribute(velem, attr);
       nodeInfo.setAttr(attr, value);
     }
   }
   //        String when = "";
   //        String[] whenEnums = {"_day", "_night"};
   //        for (String w : whenEnums) {
   //            if (psLabel.contains(w)) {
   //                when = w;
   //                psLabel = psLabel.replace(w, "");
   //            }
   //            if (title.contains(w)) {
   //                when = w;
   //                title = title.replace(w, "");
   //            }
   //        }
   return nodeInfo;
 }
Exemple #3
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 private List<String> getNodeIdsFromSQ(int nodeType) {
   ProtocolBuilder mgr = m_studyQueue.getMgr();
   ArrayList<VElement> elementList;
   elementList = mgr.getElements(null, nodeType);
   ArrayList<String> ids = new ArrayList<String>();
   for (VElement elem : elementList) {
     ids.add(elem.getAttribute(ProtocolBuilder.ATTR_ID));
   }
   return ids;
 }
Exemple #4
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 private String removeSampleInfoNode(List<String> ids) {
   String id = null;
   if (ids.size() > 0) {
     ProtocolBuilder mgr = m_studyQueue.getMgr();
     VElement vnode = mgr.getElement(ids.get(0));
     String title = mgr.getAttribute(vnode, ATTR_TITLE);
     if (title.contains("SampleInfo")) {
       id = ids.remove(0);
     }
   }
   return id;
 }
Exemple #5
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 private boolean updateNodeInSQ(String id, SQNode srcNode, List<String> changed) {
   boolean ok = false;
   ProtocolBuilder mgr = m_studyQueue.getMgr();
   VElement elem = mgr.getElement(id);
   if (elem != null) {
     for (String attr : changed) {
       String value = srcNode.getAttr(attr);
       mgr.setAttribute(elem, attr, value);
     }
     ok = true;
   }
   return ok;
 }
Exemple #6
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  public void updateStatsBgstudyUI() {
    Messages.postDebug("SQUpdater", "updateStatsBgstudyUI");
    List<String> nodes = getNodeIdsFromSQ(ProtocolBuilder.ACTIONS);
    Map<String, String> expStats = getExpStats(new File(m_dataWatchPath));
    File f = new File(m_dataDir + "/dirinfo/parlib/parliblist");
    Map<String, String> fidNames = getFidNames(f);
    //       boolean done = nodes.size() > 0;
    ProtocolBuilder mgr = m_studyQueue.getMgr();
    for (String node : nodes) {
      VElement vnode = mgr.getElement(node);
      String title = mgr.getAttribute(vnode, ATTR_TITLE);
      String stat = getValueFromTitle(title, expStats);
      if (stat != null) {
        mgr.setAttribute(vnode, ATTR_STATUS, stat);
        if (stat.equals(SQ_COMPLETED)) {
          String fidname = getValueFromTitle(title, fidNames);
          if (fidname != null) {
            mgr.setAttribute(vnode, ATTR_TITLE, fidname);
          }
        }
      }

      //           // See if this node still may change
      //           stat = m_studyQueue.getAttribute(node, ATTR_STATUS);
      //           if (stat != null) {
      //               if (stat.equalsIgnoreCase(READY)
      //                   || stat.equalsIgnoreCase(QUEUED)
      //                   || stat.equalsIgnoreCase(EXECUTING)
      //                   )
      //               {
      //                   done = false;
      //               }
      //           }
    }

    //       // Clean up if we're done
    //       // Keep getting false positives on this
    //       // ... check how many updates we've done?
    //       if (done) {
    //           Util.sendToVnmr("SQWatch('off')");
    //           Util.sendToVnmr("xmhaha('refreshSQ')");
    //       }
  }
Exemple #7
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  public void updateStatsMoreUI() {

    List<String> stats = null;
    String curSampleDir = getDataDir(m_autodir);

    File acqlist = new File(m_archiveDir + "/" + curSampleDir + "/dirinfo/macdir/ACQlist");
    stats = getStatList(acqlist);

    File enterSQ = new File(m_curSQExp + "/tmpstudy/enterSQ");
    List<String> nodes = getNodeList(enterSQ);

    int len = nodes.size();
    int statsLen = stats.size();
    for (int i = 0; i < len; i++) {
      String node = nodes.get(i);
      String status = i < statsLen ? stats.get(i) : SQ_READY;
      if (status.equals(SQ_ACTIVE)) {
        status = SQ_EXECUTING;
      }
      m_studyQueue.processCommand(SET + " " + node + " " + ATTR_STATUS + " " + status);
    }
  }
Exemple #8
0
 private NamedNodeMap getNodeAttributesFromSQ(String nodeId) {
   ProtocolBuilder mgr = m_studyQueue.getMgr();
   VElement velem = mgr.getElement(nodeId);
   NamedNodeMap attrs = velem.getAttributes();
   return attrs;
 }