public void testInfo() throws IOException {
// set a command line
CommandLine.setCommandArgs("aksfj", "-d", "djfk siduf");
try {
final ArrayList<InputStream> al = new ArrayList<>();
al.add(
createStream(
">123456789012345678901\nacgtgtgtgtcttagggctcactggtcatgca\n>bob-the-builder\ntagttcagcatcgatca\n>hobos r us\naccccaccccacaaacccaa"));
final FastaSequenceDataSource ds = new FastaSequenceDataSource(al, new DNAFastaSymbolTable());
final SequencesWriter sw = new SequencesWriter(ds, mDir, 20, PrereadType.UNKNOWN, false);
sw.setComment("wejksfd boier sakrjoieje");
sw.processSequences();
final CompressedMemorySequencesReader msr =
(CompressedMemorySequencesReader)
SequencesReaderFactory.createMemorySequencesReader(mDir, true, LongRange.NONE);
checkDetails(msr);
final CompressedMemorySequencesReader msr2 = (CompressedMemorySequencesReader) msr.copy();
assertTrue(msr2 != msr);
checkDetails(msr2);
assertEquals("wejksfd boier sakrjoieje", msr.comment());
assertEquals("wejksfd boier sakrjoieje", msr2.comment());
assertEquals("aksfj -d \"djfk siduf\"", msr.commandLine());
assertEquals("aksfj -d \"djfk siduf\"", msr2.commandLine());
} finally {
CommandLine.clearCommandArgs();
}
}
