protected void changeSequences() {
String name1 = (String) seq1Box.getSelectedItem();
Sequence seq1 = currentSG.getSequenceForName(name1);
if (revComp1Box.isSelected()) {
seq1 = seq1.getReverseComplement();
seq1.setName(name1);
}
String name2 = (String) seq2Box.getSelectedItem();
Sequence seq2 = currentSG.getSequenceForName(name2);
if (revComp2Box.isSelected()) {
seq2 = seq2.getReverseComplement();
seq2.setName(name2);
}
dotPlot.setSequences(seq1, seq2);
repaint();
}
/**
* Get the next sequence using an Oracle thread-safe sequence
*
* @param name Name is the name of the oracle sequence.
* @return the next sequence
*/
public int getNextId(String name) throws DataAccessException {
Sequence sequence = new Sequence();
sequence.setName(name);
sequence = (Sequence) getSqlMapClientTemplate().queryForObject("oracleSequence", sequence);
return sequence.getNextId();
}