/**
* Returns the Loop in X12 {@link java.lang.String} format. This method is used to convert the X12
* object into a X12 transaction.
*
* @param bRemoveTrailingEmptyElements a flag for whether or not empty trailing elements should be
* removed.
* @return String representation of the loop.
*/
public String toString(boolean bRemoveTrailingEmptyElements) {
StringBuilder dump = new StringBuilder();
for (Segment s : this.segments) {
dump.append(s.toString(bRemoveTrailingEmptyElements));
dump.append(context.getSegmentSeparator());
}
for (Loop l : this.childList()) {
dump.append(l.toString(bRemoveTrailingEmptyElements));
}
return dump.toString();
}
public static void main(String[] args) throws Exception {
String sourceUrlString = "data/test.html";
if (args.length == 0)
System.err.println("Using default argument of \"" + sourceUrlString + '"');
else sourceUrlString = args[0];
if (sourceUrlString.indexOf(':') == -1) sourceUrlString = "file:" + sourceUrlString;
StreamedSource streamedSource = new StreamedSource(new URL(sourceUrlString));
// streamedSource.setBuffer(new char[65000]); // uncomment this to use a fixed buffer size
Writer writer = null;
try {
writer =
new OutputStreamWriter(
new FileOutputStream("StreamedSourceCopyOutput.html"), streamedSource.getEncoding());
System.out.println("Processing segments:");
int lastSegmentEnd = 0;
for (Segment segment : streamedSource) {
System.out.println(segment.getDebugInfo());
if (segment.getEnd() <= lastSegmentEnd)
continue; // if this tag is inside the previous tag (e.g. a server tag) then ignore it as
// it was already output along with the previous tag.
lastSegmentEnd = segment.getEnd();
if (segment instanceof Tag) {
Tag tag = (Tag) segment;
// HANDLE TAG
// Uncomment the following line to ensure each tag is valid XML:
// writer.write(tag.tidy()); continue;
} else if (segment instanceof CharacterReference) {
CharacterReference characterReference = (CharacterReference) segment;
// HANDLE CHARACTER REFERENCE
// Uncomment the following line to decode all character references instead of copying them
// verbatim:
// characterReference.appendCharTo(writer); continue;
} else {
// HANDLE PLAIN TEXT
}
// unless specific handling has prevented getting to here, simply output the segment as is:
writer.write(segment.toString());
}
writer.close();
System.err.println(
"\nA copy of the source document has been output to StreamedSourceCopyOuput.html");
} catch (Exception ex) {
if (writer != null)
try {
writer.close();
} catch (IOException ex2) {
}
throw ex;
}
}
public String toString() {
StringBuilder sb = new StringBuilder();
String showName = MediaFileAPI.GetMediaTitle(mediaFile);
int numberOfMediaFileSegments = MediaFileAPI.GetNumberOfSegments(mediaFile);
int segmentCount = (isFileCurrentlyRecording) ? segmentList.size() - 1 : segmentList.size();
Log.debug("Show: " + showName);
Log.debug("MediaFileId: " + mediaFileId);
Log.debug("Number Of MediaFile segments: " + numberOfMediaFileSegments);
Log.debug("Is file currently recording: " + isFileCurrentlyRecording);
Log.debug("Number of playlist segments: " + segmentCount);
sb.append("#EXTM3U" + LINE_TERM);
Log.debug("#EXTM3U");
sb.append("#EXT-X-TARGETDURATION:" + TARGET_DURATION + LINE_TERM);
Log.debug("#EXT-X-TARGETDURATION:" + SegmentPlaylist.TARGET_DURATION);
// sb.append("#EXT-X-MEDIA-SEQUENCE:1" + LINE_TERM);
// Log.debug("#EXT-X-MEDIA-SEQUENCE:1");
for (int i = 0; i < segmentCount; i++) {
Segment currentSegment = segmentList.get(i);
Segment previousSegment = (i == 0) ? null : segmentList.get(i - 1);
Segment nextSegment = (i == segmentCount - 1) ? null : segmentList.get(i + 1);
String str = currentSegment.toString();
sb.append(str);
// first or last playlist segment for each media file segment
// printing the whole playlist makes the log harder to read
if ((previousSegment == null)
|| (nextSegment == null)
|| (previousSegment.mediaFileSegment != currentSegment.mediaFileSegment)
|| (currentSegment.mediaFileSegment != nextSegment.mediaFileSegment)) {
Log.debug(str);
}
}
// #EXT-X-MEDIA-SEQUENCE:<number>
// #EXT-X-PROGRAM-DATE-TIME:<YYYY-MM-DDThh:mm:ssZ>
// #EXT-X-ALLOW-CACHE:<YES|NO>
// #EXT-X-STREAM-INF
if (!isFileCurrentlyRecording) {
sb.append("#EXT-X-ENDLIST" + LINE_TERM);
Log.debug("#EXT-X-ENDLIST");
}
return sb.toString();
}
/**
* Appends the given {@link Segment} to the output.
*
* @param segment The {@link Segment}, that should be appended to the output.
*/
protected void append(Segment segment) {
this.sb.append(segment.toString());
}
private void dnaCommand(HttpServletRequest req, DazzleResponse resp, DazzleDataSource dds)
throws IOException, DataSourceException, ServletException, DazzleException {
DazzleReferenceSource drs = (DazzleReferenceSource) dds;
List segments = DazzleTools.getSegments(dds, req, resp);
if (segments.size() == 0) {
throw new DazzleException(
DASStatus.STATUS_BAD_COMMAND_ARGUMENTS, "No segments specified for dna command");
}
// Fetch and validate the requests.
Map segmentResults = new HashMap();
for (Iterator i = segments.iterator(); i.hasNext(); ) {
Segment seg = (Segment) i.next();
try {
Sequence seq = drs.getSequence(seg.getReference());
if (seq.getAlphabet() != DNATools.getDNA()) {
throw new DazzleException(
DASStatus.STATUS_SERVER_ERROR,
"Sequence " + seg.toString() + " is not in the DNA alphabet");
}
if (seg.isBounded()) {
if (seg.getMin() < 1 || seg.getMax() > seq.length()) {
throw new DazzleException(
DASStatus.STATUS_BAD_COORDS,
"Segment " + seg.toString() + " doesn't fit sequence of length " + seq.length());
}
}
segmentResults.put(seg, seq);
} catch (NoSuchElementException ex) {
throw new DazzleException(DASStatus.STATUS_BAD_REFERENCE, ex);
} catch (DataSourceException ex) {
throw new DazzleException(DASStatus.STATUS_SERVER_ERROR, ex);
}
}
//
// Looks okay -- generate the response document
//
XMLWriter xw = resp.startDasXML("DASDNA", "dasdna.dtd");
try {
xw.openTag("DASDNA");
for (Iterator i = segmentResults.entrySet().iterator(); i.hasNext(); ) {
Map.Entry me = (Map.Entry) i.next();
Segment seg = (Segment) me.getKey();
Sequence seq = (Sequence) me.getValue();
xw.openTag("SEQUENCE");
xw.attribute("id", seg.getReference());
xw.attribute("version", drs.getLandmarkVersion(seg.getReference()));
if (seg.isBounded()) {
xw.attribute("start", "" + seg.getStart());
xw.attribute("stop", "" + seg.getStop());
} else {
xw.attribute("start", "" + 1);
xw.attribute("stop", "" + seq.length());
}
SymbolList syms = seq;
if (seg.isBounded()) {
syms = syms.subList(seg.getMin(), seg.getMax());
}
if (seg.isInverted()) {
syms = DNATools.reverseComplement(syms);
}
xw.openTag("DNA");
xw.attribute("length", "" + syms.length());
for (int pos = 1; pos <= syms.length(); pos += 60) {
int maxPos = Math.min(syms.length(), pos + 59);
xw.println(syms.subStr(pos, maxPos));
}
xw.closeTag("DNA");
xw.closeTag("SEQUENCE");
}
xw.closeTag("DASDNA");
xw.close();
} catch (Exception ex) {
throw new DazzleException(ex, "Error writing DNA document");
}
}