public String toString(int max_len) {
StringBuilder sb = new StringBuilder();
// write overall TPR/FDR;
sb.append("TPR,FDR,TP,FP,T,F1:\n");
sb.append("ALL");
sb.append(':');
sb.append(sum_count);
sb.append('\n');
sb.append("[>=" + Constant.SVLEN + "]");
sb.append(':');
sb.append(svSumCount);
sb.append('\n');
for (RatioRecord bin_count : bin_counts) {
if (bin_count.getLower() > max_len) {
break;
}
if (bin_count.isEmpty()) {
continue;
}
sb.append(bin_count.rangeStr());
sb.append(':');
sb.append(bin_count.toString());
sb.append('\n');
}
return sb.toString();
}
public void addT(int val, int referenceBases) {
sum_per_base_count.incT(referenceBases);
sum_count.incT();
if (val >= Constant.SVLEN) {
svSumCount.incT();
}
for (int i = 0; i < bin_breaks.length; i++) {
if (val <= bin_breaks[i]) {
bin_counts[i].incT();
return;
}
}
bin_counts[bin_breaks.length].incT();
}
public void addFP(int val) {
sum_per_base_count.incFP(val);
sum_count.incFP();
if (val >= Constant.SVLEN) {
svSumCount.incFP();
}
for (int i = 0; i < bin_breaks.length; i++) {
if (val <= bin_breaks[i]) {
bin_counts[i].incFP();
return;
}
}
bin_counts[bin_breaks.length].incFP();
}
/**
* This only computes it for sum_per_base_count
*
* @param numNonNReferenceBases
*/
public void computeTN(int numNonNReferenceBases) {
int conditionNegative = numNonNReferenceBases - sum_per_base_count.get_T();
sum_per_base_count.set_TN(conditionNegative - sum_per_base_count.get_FP());
}