protected SelectListParameter<GenomicIntervalTypeEnum> createIntervalTypeParameter() {
OptionList<GenomicIntervalTypeEnum> options = new OptionList<GenomicIntervalTypeEnum>();
options.addOption(
GenomicIntervalTypeEnum.GENE_NAME.getValue(), GenomicIntervalTypeEnum.GENE_NAME);
options.addOption(
GenomicIntervalTypeEnum.CHROMOSOME_COORDINATES.getValue(),
GenomicIntervalTypeEnum.CHROMOSOME_COORDINATES);
ValueSelectedHandler<GenomicIntervalTypeEnum> handler =
new ValueSelectedHandler<GenomicIntervalTypeEnum>() {
@Override
public void valueSelected(GenomicIntervalTypeEnum value) {
criterion.setGenomicIntervalType(value);
setIntervalParameters();
}
};
SelectListParameter<GenomicIntervalTypeEnum> intervalTypeParameter =
new SelectListParameter<GenomicIntervalTypeEnum>(
getParameters().size(),
getRow().getRowIndex(),
options,
handler,
criterion.getGenomicIntervalType());
intervalTypeParameter.setLabel("Genome Interval");
intervalTypeParameter.setUpdateFormOnChange(true);
return intervalTypeParameter;
}
/**
* Store nv list to hash map.
*
* @param filename the filename
* @param options the options
* @param dstMap the dst map
*/
public static void storeNVListToHashMap(
String filename, OptionList options, Map<String, String> dstMap) {
if (options == null || options.getOption() == null || options.getOption().isEmpty()) {
return;
}
List<NameValue> optionNvList = options.getOption();
for (int i = 0; i < optionNvList.size(); i++) {
NameValue nv = optionNvList.get(i);
dstMap.put(nv.getName(), nv.getValue());
}
}
/**
* Gets the option list.
*
* @param filename the filename
* @param parent the parent
* @param childName the child name
* @return the option list
* @throws Exception the exception
*/
public static OptionList getOptionList(String filename, Element parent, String childName)
throws Exception {
if (parent == null) {
return null;
}
OptionList result = new OptionList();
Element optionContainer = DomParseUtil.getSingleElement(filename, parent, childName);
if (optionContainer == null) {
return null;
}
List<NameValue> outList = result.getOption();
putNVList(filename, childName, optionContainer, outList);
return result;
}
public void draw() {
JPanel current = new JPanel(new GridLayout(0, 1));
for (final Score s : this.scores) {
JPanel pane = new JPanel(new FlowLayout());
pane.add(new JLabel("|" + s.name + "|Type:" + s.type + "|DefaultValue:" + s.defVal + "|"));
JButton remove = new JButton("Remove!");
remove.setAction(
new Action() {
@Override
public void actionPerformed(ActionEvent arg0) {
delScore(s);
draw();
}
@Override
public void addPropertyChangeListener(PropertyChangeListener arg0) {}
@Override
public Object getValue(String arg0) {
return null;
}
@Override
public boolean isEnabled() {
return true;
}
@Override
public void putValue(String arg0, Object arg1) {}
@Override
public void removePropertyChangeListener(PropertyChangeListener arg0) {}
@Override
public void setEnabled(boolean arg0) {}
});
remove.setText("remove!");
pane.add(remove);
current.add(pane);
}
final JTextField name = new JTextField(16);
final OptionList type = new OptionList(this.window);
ArrayList<String> types = new ArrayList<String>();
for (ScoreType v : ScoreType.values()) {
types.add(v.toString().toLowerCase());
}
type.setVals(types);
type.draw();
type.setSelectedItem("string");
final JPanel val = new JPanel(new FlowLayout());
type.setAction(
new Action() {
@Override
public void actionPerformed(ActionEvent arg0) {
// change the value object accordingly
OptionList type = (OptionList) arg0.getSource();
String ty = (String) type.getSelectedItem();
Component value = new JTextField(16);
if (ty.equalsIgnoreCase("boolean")) {
value = new OptionList(window);
ArrayList<String> vals = new ArrayList<String>();
vals.add("true");
vals.add("false");
((OptionList) value).setVals(vals);
((OptionList) value).draw();
value.setName("value");
} else if (ty.equalsIgnoreCase("string")) {
value = new JTextField(16);
((JTextComponent) value).setEditable(true);
value.setName("value");
} else if (ty.equalsIgnoreCase("num")) {
value = new JTextField(16);
((JTextComponent) value).setEditable(true);
value.setName("valuet:num");
} else if (ty.equalsIgnoreCase("int")) {
value = new JTextField(16);
((JTextComponent) value).setEditable(true);
value.setName("valuet:int");
}
val.removeAll();
val.add(value);
window.refresh();
}
@Override
public void addPropertyChangeListener(PropertyChangeListener arg0) {}
@Override
public Object getValue(String arg0) {
return null;
}
@Override
public boolean isEnabled() {
return true;
}
@Override
public void putValue(String arg0, Object arg1) {}
@Override
public void removePropertyChangeListener(PropertyChangeListener arg0) {}
@Override
public void setEnabled(boolean arg0) {}
});
JTextField value = new JTextField(16);
value.setName("value");
value.setEditable(true);
val.add(value);
JPanel newS = new JPanel(new FlowLayout());
newS.add(new JLabel("Name:"));
newS.add(name);
type.draw();
newS.add(new JLabel("Type:"));
newS.add(type);
type.setSelectedItem("string");
newS.add(new JLabel("Default Value"));
newS.add(val);
JButton add = new JButton("Add!");
add.setName("Add!");
add.setAction(
new Action() {
@Override
public void actionPerformed(ActionEvent arg0) {
// add it
ScoreType ty = ScoreType.STRING;
String t = (String) type.getSelectedItem();
if (t.equalsIgnoreCase("boolean")) {
ty = ScoreType.BOOLEAN;
} else if (t.equalsIgnoreCase("string")) {
ty = ScoreType.STRING;
} else if (t.equalsIgnoreCase("int")) {
ty = ScoreType.INT;
} else if (t.equalsIgnoreCase("num")) {
ty = ScoreType.NUM;
}
Component[] comps = val.getComponents();
Object value = null;
for (Component comp : comps) {
if (comp.getName().toLowerCase().contains("value")) {
if (comp instanceof JTextField && comp.getName().toLowerCase().contains("t:num")) {
try {
value = Double.parseDouble(((JTextField) comp).getText());
} catch (NumberFormatException e) {
window.popUpMsg("Score value must be a number", "ERROR");
return;
}
}
if (comp instanceof JTextField && comp.getName().toLowerCase().contains("t:int")) {
try {
value = Integer.parseInt(((JTextField) comp).getText());
} catch (NumberFormatException e) {
window.popUpMsg("Score value must be an integer", "ERROR");
return;
}
}
if (comp instanceof OptionList) {
String v = ((String) ((OptionList) comp).getSelectedItem());
if (v.equalsIgnoreCase("true")) {
value = true;
} else {
value = false;
}
}
if (comp instanceof JTextField) {
value = ((JTextField) comp).getText();
}
}
}
Score score = new Score(name.getText(), value, ty);
addScore(score);
draw();
}
@Override
public void addPropertyChangeListener(PropertyChangeListener arg0) {}
@Override
public Object getValue(String arg0) {
return null;
}
@Override
public boolean isEnabled() {
return true;
}
@Override
public void putValue(String arg0, Object arg1) {}
@Override
public void removePropertyChangeListener(PropertyChangeListener arg0) {}
@Override
public void setEnabled(boolean arg0) {}
});
add.setText("Add");
add.setVisible(true);
newS.add(add);
current.add(newS);
this.removeAll();
this.add(current);
this.window.refresh();
return;
}
