@Test
public void testSimplify() throws IOException {
final File expected = new File(RESOURCE_DIR + "simplified_network.psimi.xml");
final File input = new File(RESOURCE_DIR + "unsimplified_network.psimi.xml");
final File output = new File("simplifiednetwork.psimi.xml.tmp");
output.deleteOnExit();
NetworkPreparer prep = new NetworkPreparer();
EntrySet entrySet = NetworkUtils.readNetwork(input);
entrySet = prep.simplify(entrySet);
NetworkUtils.writeNetwork(entrySet, output);
assertTrue("Simplified file is wrong", FileUtils.contentEquals(expected, output));
output.delete();
}
@Test
public void testInitConfidence() {
final File input = new File(RESOURCE_DIR + "before_init_conf.psimi.xml");
NetworkPreparer prep = new NetworkPreparer();
EntrySet entrySet = NetworkUtils.readNetwork(input);
entrySet = prep.initConfidences(entrySet, "IamaLABEL", "andImaNAME", 0.2);
File actual = new File("withinitconf.psimi.xml.tmp");
actual.deleteOnExit();
NetworkUtils.writeNetwork(entrySet, actual);
final File expected = new File(RESOURCE_DIR + "after_init_conf.psimi.xml");
boolean similar = TestUtils.compareXml(actual, expected);
assertTrue("Graph is wrong", similar);
actual.delete();
}
// @Test
public void testGetCcs() throws IOException {
final File input = new File(RESOURCE_DIR + "simplified_network.psimi.xml");
final File output = new File("cc.xml");
output.deleteOnExit();
final String expectedCcs = RESOURCE_DIR + "expected_ccs/";
NetworkPreparer prep = new NetworkPreparer();
EntrySet entrySet = NetworkUtils.readNetwork(input);
List<EntrySet> ccs = prep.getConnnectedComponents(entrySet);
assertEquals("Found the wrong number of connected components", 2, ccs.size());
for (int i = 0; i < ccs.size(); i++) {
NetworkUtils.writeNetwork(ccs.get(i), output);
final File expectedCc = new File(expectedCcs + i + ".xml");
boolean similar = TestUtils.compareXml(expectedCc, output);
assertTrue("Connected component file " + i + " is wrong", similar);
output.delete();
}
}
