protected void runScript(String[] cmd, JTextArea txaMsg) { String strg = ""; if (cmd == null) return; Process prcs = null; try { Messages.postDebug("Running script: " + cmd[2]); Runtime rt = Runtime.getRuntime(); prcs = rt.exec(cmd); if (prcs == null) return; InputStream istrm = prcs.getInputStream(); if (istrm == null) return; BufferedReader bfr = new BufferedReader(new InputStreamReader(istrm)); while ((strg = bfr.readLine()) != null) { // System.out.println(strg); strg = strg.trim(); // Messages.postDebug(strg); strg = strg.toLowerCase(); if (txaMsg != null) { txaMsg.append(strg); txaMsg.append("\n"); } } } catch (Exception e) { // e.printStackTrace(); Messages.writeStackTrace(e); Messages.postDebug(e.toString()); } finally { // It is my understanding that these streams are left // open sometimes depending on the garbage collector. // So, close them. try { if (prcs != null) { OutputStream os = prcs.getOutputStream(); if (os != null) os.close(); InputStream is = prcs.getInputStream(); if (is != null) is.close(); is = prcs.getErrorStream(); if (is != null) is.close(); } } catch (Exception ex) { Messages.writeStackTrace(ex); } } }
protected void buildPanel(String strPath) { BufferedReader reader = WFileUtil.openReadFile(strPath); String strLine; if (reader == null) return; try { while ((strLine = reader.readLine()) != null) { if (strLine.startsWith("#") || strLine.startsWith("%") || strLine.startsWith("@")) continue; StringTokenizer sTokLine = new StringTokenizer(strLine, ":"); // first token is the label e.g. Password Length if (sTokLine.hasMoreTokens()) { createLabel(sTokLine.nextToken(), this); } // second token is the value String strValue = sTokLine.hasMoreTokens() ? sTokLine.nextToken() : ""; if (strValue.equalsIgnoreCase("yes") || strValue.equalsIgnoreCase("no")) createChkBox(strValue, this); else createTxf(strValue, this); } } catch (Exception e) { Messages.writeStackTrace(e); // e.printStackTrace(); Messages.postDebug(e.toString()); } }
public void addEotDatum(int nSteps) { m_eotCount += nSteps; Messages.postDebug("AllTuneAlgorithm", "Motor " + m_gmi + " EOT count=" + m_eotCount); if (Math.abs(m_eotCount) > 5) { setEot(m_eotCount); } }
protected void writeAuditTrail(String strPath, String strUser, StringBuffer sbValues) { BufferedReader reader = WFileUtil.openReadFile(strPath); String strLine; ArrayList aListData = WUtil.strToAList(sbValues.toString(), false, "\n"); StringBuffer sbData = sbValues; String strPnl = (this instanceof DisplayTemplate) ? "Data Template " : "Data Dir "; if (reader == null) { Messages.postDebug("Error opening file " + strPath); return; } try { while ((strLine = reader.readLine()) != null) { // if the line in the file is not in the arraylist, // then that line has been deleted if (!aListData.contains(strLine)) WUserUtil.writeAuditTrail(new Date(), strUser, "Deleted " + strPnl + strLine); // remove the lines that are also in the file or those which // have been deleted. aListData.remove(strLine); } // Traverse through the remaining new lines in the arraylist, // and write it to the audit trail for (int i = 0; i < aListData.size(); i++) { strLine = (String) aListData.get(i); WUserUtil.writeAuditTrail(new Date(), strUser, "Added " + strPnl + strLine); } reader.close(); } catch (Exception e) { e.printStackTrace(); } }
/** Displays the labels and the values for the panel. */ protected void displayPnlFields(HashMap hmPnl) { if (hmPnl == null || hmPnl.isEmpty()) return; Iterator keySetItr = hmPnl.keySet().iterator(); String strLabel = ""; String strValue = ""; // if the file is empty, then create an empty set of textfields. if (hmPnl == null || hmPnl.isEmpty()) { displayNewTxf("", ""); return; } Container container = getParent(); if (container != null) container.setVisible(false); try { // Get each set of label and value, and display them. while (keySetItr.hasNext()) { strLabel = (String) keySetItr.next(); strValue = (String) hmPnl.get(strLabel); displayNewTxf(strLabel, strValue); } if (container != null) container.setVisible(true); revalidate(); repaint(); } catch (Exception e) { Messages.writeStackTrace(e); // e.printStackTrace(); Messages.postDebug(e.toString()); } }
/** Write file with position and size of the login box */ public static void writePersistence() { Messages.postDebug("LoginBox", "LoginBox.writePersistence"); // If the panel has not been created, don't try to write a file if (position == null) return; String filepath = FileUtil.savePath("USER/PERSISTENCE/LoginPanel"); FileWriter fw; PrintWriter os; try { File file = new File(filepath); fw = new FileWriter(file); os = new PrintWriter(fw); os.println("Login Panel"); os.println(height); os.println(width); double xd = position.getX(); int xi = (int) xd; os.println(xi); double yd = position.getY(); int yi = (int) yd; os.println(yi); os.close(); } catch (Exception er) { Messages.postError("Problem creating " + filepath); Messages.writeStackTrace(er); } }
/** * Set flag indicating if this motor is at the end of it's travel. Typically called after making a * motion of "step" motor steps. A positive value of "step" indicates are at the positive EOT. A * negative value of "step" indicates are at the negative EOT. A zero value for "step" indicates * are not at EOT. * * @param step Flag that we are at EOT for steps in this direction. */ public void setEot(int step) { m_eotStatus = step; if (step == 0) { m_eotCount = 0; } else if (DebugOutput.isSetFor("TuneAlgorithm")) { Messages.postDebug("Setting EOT=" + step + " on motor " + m_gmi); } }
/** * Update the motor position, based on increment from last position. Also updates the backlash * tracking. * * @param n The number of steps from the previous position. */ public void incrementPosition(int n) { Messages.postDebug("BacklashTracking", "incrementPosition(" + n + ") called"); if (n != 0) { m_position += n; if (!isSameDirection(n)) { m_distanceThisDirection = 0; // Reversed direction } m_distanceThisDirection += Math.abs(n); if (n != 0) { m_lastStep = n; } } }
protected String getSampleName(String strDir, String strTray) { String strSampleName = ""; String strSample; int nTray = 0; try { nTray = Integer.parseInt(strTray); } catch (Exception e) { } if (nTray <= 0) return strSampleName; String cmd = "SELECT loc_,studystatus from study WHERE (autodir=\'" + strDir + "\') AND (hostname=\'" + getHost() + "\')"; // NB: bArrSample[0] is not used; array implicitly initialized false boolean[] bArrSample = new boolean[nTray + 1]; m_dbResult = null; try { m_dbResult = getdbmanager().executeQuery(cmd); } catch (Exception e) { return strSampleName; } if (m_dbResult == null) return strSampleName; try { while (m_dbResult.next()) { strSample = m_dbResult.getString(1); int nSample = 0; nSample = Integer.parseInt(strSample); try { bArrSample[nSample] = true; } catch (IndexOutOfBoundsException ioobe) { Messages.postDebug("getSampleName: index out of bounds: " + nSample); } } for (int i = 1; i < bArrSample.length; i++) { if (!bArrSample[i]) { strSampleName = String.valueOf(i); break; } } } catch (Exception e) { // e.printStackTrace(); Messages.writeStackTrace(e); } return strSampleName; }
/** Update state from Infostat. */ public void updateStatus(String msg) { // Messages.postDebug("VLcStatusChart.updateStatus(" + msg + ")");/*CMP*/ if (msg == null) { return; } StringTokenizer tok = new StringTokenizer(msg); if (tok.hasMoreTokens()) { String key = tok.nextToken(); String val = ""; if (tok.hasMoreTokens()) { val = tok.nextToken("").trim(); // Get remainder of msg } if (key.equals(statkey)) { if (val != null && !val.equals("-")) { valstr = val; setState(state); } /*System.out.println("Chart: statkey=" + statkey + ", val=" + val);/*CMP*/ } if (key.equals(statpar)) { if (val != null && !val.equals("-")) { /*System.out.println("Chart statpar=" + statpar + ", value=" + value);/*CMP*/ setState(state); } } if (key.equals(statset)) { if (val != null && !val.equals("-")) { setval = val; try { String num = val.substring(0, val.indexOf(' ')); setStatusValue(Double.parseDouble(num)); } catch (NumberFormatException nfe) { Messages.postDebug("VLcStatusChart.updateStatus(): " + "Non-numeric value: " + msg); } catch (StringIndexOutOfBoundsException sioobe) { setStatusValue(0); // No value found } /*System.out.println("Chart statset=" + statset + ", setval=" + setval);/*CMP*/ setState(state); } } } repaint(); }
/** * Save the data to the file. Read the data from the file, and copy everything to the * stringbuffer. The lines in the file are of the form: * auditDir:system:/vnmr/part11/auditTrails:system file:standard:text:yes Based on these formats, * get the value of either the directory or the checkbox from the corresponding components, and * replace that value in the stringbuffer. */ protected void saveData() { BufferedReader reader = WFileUtil.openReadFile(m_strPath); String strLine = null; StringBuffer sbData = new StringBuffer(); if (reader == null) return; int nLineInd = 0; try { while ((strLine = reader.readLine()) != null) { // if the line starts with a comment from sccs, add '#' to it, // to make it a comment if (strLine.startsWith("%") || strLine.startsWith("@")) strLine = "# " + strLine; if (strLine.startsWith("#")) { sbData.append(strLine + "\n"); continue; } StringTokenizer sTok = new StringTokenizer(strLine, File.pathSeparator); boolean bFile = false; boolean bLineEnd = false; boolean bDir = false; for (int i = 0; sTok.hasMoreTokens(); i++) { String strValue = sTok.nextToken(); if (i == 0) { bFile = strValue.equalsIgnoreCase("file") ? true : false; bDir = false; if (strValue.equalsIgnoreCase("dir")) bDir = true; } else { // Case => file:standard:procpar:yes // skip over 'standard', 'procpar', // and get the value 'yes' or 'no' from the checkbox if (bFile) { if (i == 3) { String strNewValue = getValue(nLineInd); if (strNewValue != null) strValue = strNewValue; bLineEnd = true; } else bLineEnd = false; } else if (bDir) { bLineEnd = false; if (i == 3) bLineEnd = true; } // Case => part11Dir:/vnmr/part11/data 0r // Case => dataType:FDA // skip over 'part11Dir' // and get the value of the directory from the textfield, // or from the combobox else { if (i == 1) { String strNewValue = getValue(nLineInd); if (strNewValue != null) strValue = strNewValue; bLineEnd = true; } else bLineEnd = false; } } // copy the value to the stringbuffer sbData.append(strValue); if (!bLineEnd) sbData.append(File.pathSeparator); } nLineInd++; sbData.append("\n"); } // write the data to the file reader.close(); BufferedWriter writer = WFileUtil.openWriteFile(m_strPath); WFileUtil.writeAndClose(writer, sbData); m_objTimer = new javax.swing.Timer( 200, new ActionListener() { public void actionPerformed(ActionEvent e) { VItemAreaIF.firePropertyChng(Global.PART11_CONFIG_FILE, "all", ""); m_objTimer.stop(); } }); m_objTimer.start(); } catch (Exception e) { Messages.writeStackTrace(e); // e.printStackTrace(); Messages.postDebug(e.toString()); } }
/** Reads the file, and sets the label and the values in the hashmap. */ protected void setHM(String strPath, HashMap hmPnl) { BufferedReader reader = WFileUtil.openReadFile(strPath); boolean bFileEmpty = true; boolean bPart11Pnl = isPart11Pnl(); boolean bDefaultFile = isDefaultFile(); // if the file is empty, then create an empty set of textfields. if (reader == null) { // displayNewTxf("",""); return; } String strLine = null; StringTokenizer strTok; try { // read the file, and create a new set of textfields, // with the values from the file. while ((strLine = reader.readLine()) != null) { String strLabel = ""; String strValue = ""; bFileEmpty = false; if (strLine.startsWith("#") || strLine.startsWith("@") || strLine.startsWith("%") || strLine.startsWith("\"@")) continue; if (strLine.startsWith("\"")) strTok = new StringTokenizer(strLine, "\""); else strTok = new StringTokenizer(strLine, File.pathSeparator + ",\n"); if (!strTok.hasMoreTokens()) continue; strLabel = strTok.nextToken(); // the format for the part11 Default file is a little different // only parse out the part11Dir, and don't display other defaults if (bPart11Pnl && bDefaultFile) { if (!strLabel.equalsIgnoreCase("part11Dir")) continue; } if (strTok.hasMoreTokens()) { while (strTok.hasMoreTokens()) { strValue += strTok.nextToken(); if (strTok.hasMoreTokens()) strValue += " "; } } // append "/data/$name" to part11Dir if (bPart11Pnl && bDefaultFile && strLabel.equalsIgnoreCase("part11Dir")) { StringBuffer sbDir = new StringBuffer(strValue); if (sbDir.lastIndexOf(File.separator) < sbDir.length() - 1) sbDir.append(File.separator); sbDir.append("data" + File.separator + "$"); sbDir.append(WGlobal.NAME); strValue = sbDir.toString(); } // displayNewTxf(strLabel, strValue); if (strLabel != null && strLabel.trim().length() > 0) hmPnl.put(strLabel, strValue); } reader.close(); } catch (Exception e) { Messages.writeStackTrace(e); // e.printStackTrace(); Messages.postDebug(e.toString()); } }
protected void enterLogin() { char[] password = m_passwordField.getPassword(); String strUser = (String) m_cmbUser.getSelectedItem(); setCursor(Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR)); boolean blogin = WUserUtil.isOperatorNameok(strUser, false); if (blogin) { blogin = vnmrjPassword(strUser, password); if (!blogin) blogin = unixPassword(strUser, password); } if (blogin) { m_lblLogin.setForeground(Color.black); m_lblLogin.setText("Login Successful"); m_lblLogin.setVisible(true); // Get the Email column string for access to the operator data String emStr = vnmr.util.Util.getLabel("_admin_Email"); String stremail = WUserUtil.getOperatordata(strUser, emStr); // Get the Panel Level column string for access to the operator data String plStr = vnmr.util.Util.getLabel("_admin_Panel_Level"); String strPanel = WUserUtil.getOperatordata(strUser, plStr); if (stremail == null || stremail.equals("null")) stremail = ""; try { Integer.parseInt(strPanel); } catch (Exception e) { strPanel = WGlobal.PANELLEVEL; } m_trayTimer.stop(); Messages.postDebug(" Login: "******"appdir('reset','") .append(strUser) .append("','") .append(stremail) .append("',") .append(strPanel) .append(")") .toString()); exp.sendToVnmr("vnmrjcmd('util', 'bgReady')\n"); } setVisible(false); // Save the current position and size of this panel in case it // was changed Dimension size = getSize(); width = size.width; height = size.height; position = getLocation(); writePersistence(); // Call the macro to update this operator's // ExperimentSelector_operatorName.xml file // from the protocols themselves. This macro will // cause an update of the ES when it is finished // Util.getAppIF().sendToVnmr("updateExpSelector"); // I am not sure why we need to force updates since updateExpSelector // should have caused an update by writing to ES_op.xml file. // However, it works better if we do the force update. // ExpSelector.setForceUpdate(true); } else { m_lblLogin.setForeground(DisplayOptions.getColor("Error")); // m_lblLogin.setText("<HTML>Incorrect username/password <p> Please try again </HTML>"); m_lblLogin.setVisible(true); } setCursor(Cursor.getDefaultCursor()); }