private void saveResults(
TnrsJob job,
JSONObject results,
Vector<String> ids,
Vector<String> original_names,
String session_id)
throws Exception {
if (job.getType() == TnrsJob.PARSING_JOB) {
ParsingResultsFile csv = new ParsingResultsFile(job, baseFolder);
csv.writeJsonData(results.getJSONArray("parsedNames"), ids);
} else {
MatchingResultsFile csv = new MatchingResultsFile(job, baseFolder, session_id, false);
TNRSResultsTransformer transformer = new TNRSResultsTransformer();
JSONArray results_array = transformer.transform(results, job, ids, original_names);
csv.writeJsonData(results_array, ids);
csv.close();
}
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject json =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
String email = json.getString("email");
String key = json.getString("key");
String session_id = json.getString("session_id");
TnrsJob job = JobHelper.readJobInfo(baseFolder, email, key);
if (job.getType() == TnrsJob.PARSING_JOB) {
ParsingResultsFile results = new ParsingResultsFile(job, baseFolder);
results.createFileForDownload(properties.getProperty("org.iplantc.folder.tmp"));
} else {
MatchingResultsFile results = new MatchingResultsFile(job, baseFolder, session_id, false);
results.createFileForDownload(
properties.getProperty("org.iplantc.tnrs.folder.tmp"), json);
results.close();
}
String url = servicesUrl + "getcsv?id=" + key;
HandlerHelper.writeResponseRequest(arg0, 200, url, null);
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
ex.printStackTrace();
}
}