/**
* Print the current state of this SpatialCluster to the given File.
*
* <p>Used mainly for debugging.
*
* @param file the File to write the current state to.
* @throws IOException if an I/O occurred when trying to write to <code>file</code>
*/
void exportCurrState(File file) throws IOException {
file.createNewFile();
PrintStream out = new PrintStream(file);
Iterator<MatchPoint> it = currPoints.iterator();
while (it.hasNext()) {
MatchPoint tmp = it.next();
out.println(tmp.x() + "\t" + Math.abs(tmp.y()) + "\t0");
}
Iterator<ReadCluster> kcIt = readPairClusters.iterator();
while (kcIt.hasNext()) {
ReadCluster tmpKc = kcIt.next();
it = tmpKc.getMatchPoints().iterator();
while (it.hasNext()) {
MatchPoint tmp = it.next();
out.println(tmp.x() + "\t" + Math.abs(tmp.y()) + "\t" + tmpKc.id);
}
}
out.close();
}
@Override
public int compare(MatchPoint arg0, MatchPoint arg1) {
if (arg0.x() == arg1.x()) return arg0.y() - arg1.y();
else return arg0.x() - arg1.x();
}
