@Test(dataProvider = "failingIntervals")
public void testDiagnosticLiftover(final Interval fromInterval) {
final List<LiftOver.PartialLiftover> partials = liftOver.diagnosticLiftover(fromInterval);
System.out.println("Diagnosing " + fromInterval + " (len " + fromInterval.length() + ")");
for (final LiftOver.PartialLiftover partial : partials) {
System.out.println(partial);
}
}
@Test(dataProvider = "testIntervals")
public void testBasic(final Interval in, final Interval expected) {
final Interval out = liftOver.liftOver(in);
Assert.assertEquals(out, expected);
}
@BeforeClass
public void initLiftOver() {
liftOver = new LiftOver(CHAIN_FILE);
contigMap = liftOver.getContigMap();
}