public ConnectionForm() {
setContentPane(contentPane);
setModal(true);
getRootPane().setDefaultButton(buttonOK);
JMenuBar menuBar = new JMenuBar();
menuBar.setVisible(true);
JMenu menu = new JMenu("Menu");
menu.setVisible(true);
JMenuItem statementItem = new JMenuItem("SQL Insert");
statementItem.setVisible(true);
statementItem.addActionListener(new SQLImportActionListener());
statementItem.setEnabled(false);
JMenuItem importItem = new JMenuItem("Files Import");
importItem.setEnabled(false);
importItem.setVisible(true);
menu.add(statementItem);
menu.add(importItem);
menuBar.add(menu);
setJMenuBar(menuBar);
buttonOK.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
JFileChooser fileChooser = new JFileChooser();
fileChooser.setCurrentDirectory(new File(System.getProperty("user.home")));
int result = fileChooser.showOpenDialog(getParent());
}
});
dbField.addMouseListener(new DBFileMouseListener(getParent()));
filesField.addMouseListener(new SQLFilesMouseListener(getParent()));
// call onCancel() when cross is clicked
setDefaultCloseOperation(DO_NOTHING_ON_CLOSE);
addWindowListener(
new WindowAdapter() {
public void windowClosing(WindowEvent e) {
onCancel();
}
});
// call onCancel() on ESCAPE
contentPane.registerKeyboardAction(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
onCancel();
}
},
KeyStroke.getKeyStroke(KeyEvent.VK_ESCAPE, 0),
JComponent.WHEN_ANCESTOR_OF_FOCUSED_COMPONENT);
}
private JMenu createGenomeSpaceMenu() {
JMenu menu = new JMenu("GenomeSpace");
MenuAction menuAction = null;
menuAction = new LoadFromGSMenuAction("Load File from GenomeSpace...", KeyEvent.VK_U, igv);
menu.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menu.addSeparator();
menuAction =
new LoadGenomeFromGSMenuAction("Load Genome from GenomeSpace...", KeyEvent.VK_Z, igv);
menu.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menu.addSeparator();
menuAction = new GSSaveSessionMenuAction("Save Session to GenomeSpace...", igv);
menu.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menuAction = new GSOpenSessionMenuAction("Load Session from GenomeSpace...", igv);
menu.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menu.add(new JSeparator());
menuAction =
new MenuAction("Logout") {
@Override
public void actionPerformed(ActionEvent e) {
GSUtils.logout();
if (MessageUtils.confirm(
"You must shutdown IGV to complete the GenomeSpace logout. Shutdown now?")) {
doExitApplication();
}
}
};
menu.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menu.add(new JSeparator());
menuAction =
new MenuAction("Register... ") {
@Override
public void actionPerformed(ActionEvent e) {
try {
BrowserLauncher.openURL(GENOMESPACE_REG_PAGE);
} catch (IOException ex) {
log.error("Error opening browser", ex);
}
}
};
menuAction.setToolTipText(GENOMESPACE_REG_TOOLTIP);
menu.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menu.setVisible(
PreferenceManager.getInstance().getAsBoolean(PreferenceManager.GENOME_SPACE_ENABLE));
return menu;
}
public MainWindow() {
try {
LoginWindow loginDlg = new LoginWindow(this);
loginDlg.setVisible(true);
final User user;
// if logon fail
if (!loginDlg.ResultLogin()) {
System.exit(0);
} else {
user = loginDlg.getUser();
sessionController.setUser(user);
}
} catch (Exception ex) {
JOptionPane.showMessageDialog(this, ex.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
ex.printStackTrace(System.err);
}
this.initComponents();
this.setJMenuBar(mb);
this.add(mainBar, BorderLayout.NORTH);
this.add(imgPanel, BorderLayout.CENTER);
this.setSize(800, 535);
this.setTitle("Diagnosis Helper");
this.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
this.setVisible(true);
// Check if User logged is Administrator
if (sessionController.isAdministrator()) {
mnuMaintenance.setVisible(true);
} else {
mnuMaintenance.setVisible(false);
}
this.addWindowListener(
new WindowAdapter() {
public void windowClosing(WindowEvent e) {
safeExit();
}
});
}
@Override
public void run() {
// Frame
final JFrame frame = new JFrame("Keyword");
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
frame.setSize(800, 600);
frame.setLocationRelativeTo(null);
frame.setVisible(true);
// FileChooser
final JFileChooser fileChooser = new JFileChooser();
fileChooser.setSize(800, 600);
// Menubar
JMenuBar menubar = new JMenuBar();
frame.setJMenuBar(menubar);
// Menus
JMenu menuFile = new JMenu("File");
menuFile.setVisible(true);
menubar.add(menuFile);
// MenuItems
JMenuItem itemOpenFile =
new JMenuItem(
new AbstractAction("Open File") {
@Override
public void actionPerformed(ActionEvent actionEvent) {
int returnVal = fileChooser.showOpenDialog(frame);
if (returnVal == JFileChooser.APPROVE_OPTION) {
File file = fileChooser.getSelectedFile();
// This is where a real application would open the file.
System.out.println("Opening: " + file.getPath() + ".");
} else {
System.out.println("Open command cancelled by user.");
}
}
});
menuFile.add(itemOpenFile);
}
private JMenu createExtrasMenu() {
List<JComponent> menuItems = new ArrayList<JComponent>();
MenuAction menuAction = null;
final JCheckBoxMenuItem exomeModeItem = new JCheckBoxMenuItem("Exome mode");
exomeModeItem.setSelected(FrameManager.isExomeMode());
exomeModeItem.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent actionEvent) {
FrameManager.setExomeMode(exomeModeItem.isSelected(), true);
igv.resetFrames();
}
});
menuItems.add(exomeModeItem);
menuItems.add(new JSeparator());
// Preferences reset
menuAction = new ResetPreferencesAction("Reset Preferences", IGV.getInstance());
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menuItems.add(new JSeparator());
menuAction =
new MenuAction("Variant list ... *EXPERIMENTAL*") {
@Override
public void actionPerformed(ActionEvent e) {
VariantListManager.openNavigator(IGV.getMainFrame());
}
};
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menuItems.add(new JSeparator());
// Set frame dimensions
menuAction =
new MenuAction("Set window dimensions", null, KeyEvent.VK_C) {
@Override
public void actionPerformed(ActionEvent e) {
String value = JOptionPane.showInputDialog("Enter dimensions, e.g. 800x400");
if (value != null) {
String[] vals = value.split("x");
if (vals.length == 2) {
int w = Integer.parseInt(vals[0]);
int h = Integer.parseInt(vals[1]);
IGV.getMainFrame().setSize(w, h);
}
}
}
};
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
// Save entire window
menuAction =
new MenuAction("Save Screenshot ...", null, KeyEvent.VK_A) {
@Override
public void actionPerformed(ActionEvent e) {
IGV.getInstance().saveImage(IGV.getInstance().getContentPane());
}
};
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menuAction = new ExportTrackNamesMenuAction("Export track names...", IGV.getInstance());
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
menuAction =
new MenuAction("Scatter Plot ...") {
@Override
public void actionPerformed(ActionEvent e) {
final ReferenceFrame defaultFrame = FrameManager.getDefaultFrame();
String chr = defaultFrame.getChrName();
int start = (int) defaultFrame.getOrigin();
int end = (int) defaultFrame.getEnd();
int zoom = defaultFrame.getZoom();
ScatterPlotUtils.openPlot(chr, start, end, zoom);
}
};
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
MenuAction extrasMenuAction = new MenuAction("Extras");
JMenu menu = MenuAndToolbarUtils.createMenu(menuItems, extrasMenuAction);
//
JMenu lfMenu = new JMenu("L&F");
LookAndFeel lf = UIManager.getLookAndFeel();
for (UIManager.LookAndFeelInfo info : UIManager.getInstalledLookAndFeels()) {
final String lfName = info.getName();
JMenuItem cb = new JMenuItem(lfName);
// cb.setSelected(info.getClassName().equals(lf.getClass().getName());
cb.addActionListener(
new AbstractAction() {
public void actionPerformed(ActionEvent actionEvent) {
for (UIManager.LookAndFeelInfo info : UIManager.getInstalledLookAndFeels()) {
if (lfName.equals(info.getName())) {
try {
UIManager.setLookAndFeel(info.getClassName());
} catch (Exception e) {
e.printStackTrace();
}
break;
}
}
}
});
lfMenu.add(cb);
}
menu.add(lfMenu);
menu.setVisible(false);
return menu;
}
public void enableExtrasMenu() {
extrasMenu.setVisible(true);
}
