@Test
public void testLazyProtoToPig() throws ExecException {
Person personProto = Fixtures.buildPersonProto();
Tuple protoTuple = new ProtobufTuple(personProto);
Tuple normalTuple = Fixtures.buildPersonTuple();
List<FieldDescriptor> fieldDescs = personProto.getDescriptorForType().getFields();
TypeRef<Person> typeRef = PigUtil.getProtobufTypeRef(Person.class.getName());
Tuple projectedTuple =
new ProjectedProtobufTupleFactory<Person>(typeRef, evenFields(fieldDescs))
.newTuple(personProto);
int idx = 0;
for (FieldDescriptor fd : fieldDescs) {
// Skipping data bags. Data bags actually work; it' just our fixture is not good for this,
// since it tests "default value" functionality by leaving some elements as null, expecting
// protobuf conversion to fill the nulls in. Which is what happens. But that means converting
// back
// gives us non-null fields, which are not equal to the null fields...
if (normalTuple.get(fd.getIndex()) instanceof DataBag) {
continue;
}
assertEquals(protoTuple.get(fd.getIndex()), normalTuple.get(fd.getIndex()));
if (idx % 2 == 0) {
assertEquals(projectedTuple.get(fd.getIndex() / 2), normalTuple.get(fd.getIndex()));
}
idx++;
}
}
public void testEditReportingPeriodReviewCommentWithId() {
Integer reportingPeriodId = 5;
String newComment = "new Comment";
String userId = "userId";
Integer commentId = 2;
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
ReportingPeriodReviewComment comment =
Fixtures.createReportingPeriodReviewComment(1, "comment 1");
ArrayList<ReportingPeriodReviewComment> commentsList =
new ArrayList<ReportingPeriodReviewComment>();
commentsList.add(comment);
comment = Fixtures.createReportingPeriodReviewComment(2, "comment 2");
commentsList.add(comment);
rp.setReviewComments(commentsList);
EasyMock.expect(rpDao.getById(reportingPeriodId)).andReturn(rp);
rpDao.modifyOrSaveReviewStatusAndComments(rp);
replayMocks();
impl.editReportingPeriodReviewComment(reportingPeriodId, newComment, userId, commentId);
verifyMocks();
assertEquals(
"Edit comment isnt working correctly",
"new Comment",
rp.getReviewCommentsInternal().get(1).getUserComment());
}
public void testEnactReportWorkflow() {
long processId = 5;
StudyParticipantAssignment assignment = Fixtures.createAssignment();
ExpeditedAdverseEventReport aeReport = Fixtures.createSavableExpeditedReport();
Report report = Fixtures.createReport("testReport");
aeReport.setId(55);
AdverseEventReportingPeriod reportingPeriod = Fixtures.createReportingPeriod();
WorkflowConfig workflowConfig = Fixtures.createWorkflowConfig("test");
StudySite site = assignment.getStudySite();
StudySiteWorkflowConfig ssWfCfg = new StudySiteWorkflowConfig("report", site, workflowConfig);
site.addStudySiteWorkflowConfig(ssWfCfg);
reportingPeriod.addAeReport(aeReport);
aeReport.setAssignment(assignment);
aeReport.addReport(report);
Map<String, Object> variables = new HashMap<String, Object>();
variables.put(WorkflowService.VAR_STUDY_ID, site.getStudy().getId());
variables.put(WorkflowService.VAR_WF_TYPE, Report.class.getName());
variables.put(WorkflowService.VAR_REPORT_ID, report.getId());
variables.put(WorkflowService.VAR_EXPEDITED_REPORT_ID, aeReport.getId());
variables.put(WorkflowService.VAR_WF_STUDY_NAME, reportingPeriod.getStudy().getDisplayName());
variables.put(
WorkflowService.VAR_WF_SUBJECT_NAME, reportingPeriod.getParticipant().getFullName());
variables.put(WorkflowService.VAR_WF_COURSE_NAME, reportingPeriod.getName());
EasyMock.expect(wfService.createProcessInstance("test", variables)).andReturn(processInstance);
EasyMock.expect(processInstance.getId()).andReturn(processId).anyTimes();
reportDao.save(report);
replayMocks();
impl.enactReportWorkflow(report);
verifyMocks();
}
public void doJob() {
// Check if the database is empty
if (Account.count() == 0) {
Fixtures.deleteDatabase();
Fixtures.loadModels("data.yml");
}
}
public void testEnactReportingPeriodWorkflow() {
long processId = 5;
StudyParticipantAssignment assignment = Fixtures.createAssignment();
AdverseEventReportingPeriod reportingPeriod = Fixtures.createReportingPeriod();
reportingPeriod.setId(44);
WorkflowConfig workflowConfig = Fixtures.createWorkflowConfig("test");
StudySite site = assignment.getStudySite();
StudySiteWorkflowConfig ssWfCfg =
new StudySiteWorkflowConfig("reportingPeriod", site, workflowConfig);
site.addStudySiteWorkflowConfig(ssWfCfg);
reportingPeriod.setAssignment(assignment);
Map<String, Object> variables = new HashMap<String, Object>();
variables.put(WorkflowService.VAR_STUDY_ID, site.getStudy().getId());
variables.put(WorkflowService.VAR_WF_TYPE, AdverseEventReportingPeriod.class.getName());
variables.put(WorkflowService.VAR_WF_STUDY_NAME, reportingPeriod.getStudy().getDisplayName());
variables.put(
WorkflowService.VAR_WF_SUBJECT_NAME, reportingPeriod.getParticipant().getFullName());
variables.put(WorkflowService.VAR_WF_COURSE_NAME, reportingPeriod.getName());
variables.put(WorkflowService.VAR_REPORTING_PERIOD_ID, reportingPeriod.getId());
EasyMock.expect(wfService.createProcessInstance("test", variables)).andReturn(processInstance);
EasyMock.expect(processInstance.getId()).andReturn(processId).anyTimes();
rpDao.modifyOrSaveReviewStatusAndComments(reportingPeriod);
replayMocks();
impl.enactReportingPeriodWorkflow(reportingPeriod);
verifyMocks();
}
public void testIsReportingPeriodHavingReportsWithSpecifiedStatusNegative() {
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
Report report = Fixtures.createReport("test report");
report.setStatus(ReportStatus.INPROCESS);
ExpeditedAdverseEventReport aeReport = new ExpeditedAdverseEventReport();
aeReport.addReport(report);
rp.addAeReport(aeReport);
assertFalse(impl.isReportingPeriodHavingReportsWithSpecifiedStatus(rp, ReportStatus.COMPLETED));
}
@Before
public void setup() {
Fixtures.deleteAll();
Fixtures.load("data.yml");
duckRunnerGame = Game.find("byName", "Duck Runner").first();
parkingLotGame = Game.find("byName", "Parking Lot").first();
}
@Test
public void joeBuysStandardTicketForGizmoEvent() {
EventOrganizer eventOrganizer = new EventOrganizer();
Event gizmoEvent = Fixtures.createEvent("Gizmo");
TicketType standardTicketType = Fixtures.createTicketType("Standard");
eventOrganizer.buyTicket(gizmoEvent, "Joe", standardTicketType);
assertTrue(eventOrganizer.hasValidTicket("Joe", gizmoEvent));
}
public void testDeleteReportReviewComment() {
Report report = Fixtures.createReport("testReport");
ArrayList<ReportReviewComment> commentsList = new ArrayList<ReportReviewComment>();
commentsList.add(Fixtures.createReportReviewComment(1, "comment 1"));
commentsList.add(Fixtures.createReportReviewComment(2, "comment 2"));
commentsList.add(Fixtures.createReportReviewComment(3, "comment 3"));
report.setReviewComments(commentsList);
EasyMock.expect(reportDao.getById(10)).andReturn(report);
reportDao.save(report);
replayMocks();
impl.deleteReportReviewComment(10, 2);
verifyMocks();
assertEquals(
"Comment not deleted from comments list", 2, report.getReviewCommentsInternal().size());
}
@Test
public void findGizmoEvent() {
EventOrganizer eventOrganizer = new EventOrganizer();
Event gizmoEvent = Fixtures.createEvent("Gizmo");
assertTrue(eventOrganizer.findAvailableEvents().contains(gizmoEvent));
}
@Test
public void findGizmoEventByName() {
EventOrganizer eventOrganizer = new EventOrganizer();
Event gizmoEvent = Fixtures.createEvent("Gizmo");
assertEquals(gizmoEvent, eventOrganizer.findEvent("Gizmo"));
}
@Test
public void noValidTicket() {
EventOrganizer eventOrganizer = new EventOrganizer();
Event gizmoEvent = Fixtures.createEvent("Gizmo");
assertFalse(eventOrganizer.hasValidTicket("Joe", gizmoEvent));
}
public void doJob() {
// Check if the database is empty
if (User.count() == 0) {
// Initial data of the plateform
Fixtures.load("initial-data.yml");
}
}
@Test
public void fullTest() {
Fixtures.loadModels("data.yml");
// Count things
}
public void testAdvanceReportWorkflow() {
Integer id = 10;
Integer wfId = 5;
String transitionToTake = "abcd";
String loginId = "SYSTEM_ADMIN";
ReviewStatus reviewStatus = ReviewStatus.DRAFT_INCOMPLETE;
Report report = Fixtures.createReport("testReport");
report.setStatus(ReportStatus.INPROCESS);
report.setReviewComments(new ArrayList<ReportReviewComment>());
report.setWorkflowId(wfId);
List<String> transitions = new ArrayList<String>();
ReportSubmittability errorMessagesMock = registerMockFor(ReportSubmittability.class);
EasyMock.expect(errorMessagesMock.isSubmittable()).andReturn(true);
EasyMock.expect(reportValidationService.isSubmittable(report)).andReturn(errorMessagesMock);
EasyMock.expect(wfService.nextTransitionNames(wfId, loginId)).andReturn(transitions);
EasyMock.expect(wfService.advanceWorkflow(wfId, transitionToTake)).andReturn(reviewStatus);
EasyMock.expect(reportDao.getById(id)).andReturn(report);
reportDao.save(report);
replayMocks();
List<String> transitionsNames = impl.advanceReportWorkflow(wfId, transitionToTake, id, loginId);
verifyMocks();
assertEquals(
"A review comment for the action of advancing workflow was not added",
1,
report.getReviewCommentsInternal().size());
}
public void testAddReportingPeriodReviewCommentWithObject() {
String comment = "mycomment";
String userId = "userId";
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
rp.setReviewComments(new ArrayList<ReportingPeriodReviewComment>());
impl.addReportingPeriodReviewComment(rp, comment, userId);
assertEquals("Incorrect number of comments", 1, rp.getReviewComments().size());
}
public void testDeleteReportingPeriodReviewComment() {
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
ArrayList<ReportingPeriodReviewComment> commentsList =
new ArrayList<ReportingPeriodReviewComment>();
commentsList.add(Fixtures.createReportingPeriodReviewComment(1, "comment 1"));
commentsList.add(Fixtures.createReportingPeriodReviewComment(2, "comment 2"));
commentsList.add(Fixtures.createReportingPeriodReviewComment(3, "comment 3"));
rp.setReviewComments(commentsList);
rp.setId(1);
EasyMock.expect(rpDao.getById(1)).andReturn(rp);
rpDao.modifyOrSaveReviewStatusAndComments(rp);
replayMocks();
impl.deleteReportingPeriodReviewComment(1, 2);
verifyMocks();
assertEquals(
"Comment not deleted from comments list", 2, rp.getReviewCommentsInternal().size());
}
public void testAeReportHasWorkflowOnActiveReportsWithInactiveReports() {
Report report = Fixtures.createReport("test report");
report.setStatus(ReportStatus.AMENDED);
report.setWorkflowId(2);
ExpeditedAdverseEventReport aeReport = new ExpeditedAdverseEventReport();
aeReport.addReport(report);
assertFalse(
"aeReportHasWorkflowOnActive reports should have returned false",
impl.aeReportHasWorkflowOnActiveReports(aeReport));
}
public void testAeReportHasWorkflowOnActiveReportsWithActiveReports() {
Report report = Fixtures.createReport("test report");
report.setStatus(ReportStatus.COMPLETED);
report.setWorkflowId(1);
ExpeditedAdverseEventReport aeReport = new ExpeditedAdverseEventReport();
aeReport.addReport(report);
assertTrue(
"aeReportHasWorkflowOnActive reports should have returned true",
impl.aeReportHasWorkflowOnActiveReports(aeReport));
}
public void testEditReportingPeriodReviewCommentWithoutObject() {
String newComment = "new Comment";
String userId = "userId";
Integer commentId = 2;
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
ReportingPeriodReviewComment comment =
Fixtures.createReportingPeriodReviewComment(1, "comment 1");
ArrayList<ReportingPeriodReviewComment> commentsList =
new ArrayList<ReportingPeriodReviewComment>();
commentsList.add(comment);
comment = Fixtures.createReportingPeriodReviewComment(2, "comment 2");
commentsList.add(comment);
rp.setReviewComments(commentsList);
impl.editReportingPeriodReviewComment(rp, newComment, userId, commentId);
assertEquals(
"Edit comment isnt working correctly",
"new Comment",
rp.getReviewCommentsInternal().get(1).getUserComment());
}
public void testFetchReviewCommentsForReportingPeriod() {
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
List<ReportingPeriodReviewComment> reviewComments =
new ArrayList<ReportingPeriodReviewComment>();
rp.setReviewComments(reviewComments);
Integer rpId = 5;
EasyMock.expect(rpDao.getById(rpId)).andReturn(rp);
replayMocks();
List<? extends ReviewComment> comments = impl.fetchReviewCommentsForReportingPeriod(rpId);
verifyMocks();
assertEquals(reviewComments.size(), comments.size());
}
public void testFetchReviewCommentsForReport() {
Report report = Fixtures.createReport("testReport");
List<ReportReviewComment> reviewComments = new ArrayList<ReportReviewComment>();
report.setReviewComments(reviewComments);
Integer reportId = 10;
EasyMock.expect(reportDao.getById(reportId)).andReturn(report);
replayMocks();
List<? extends ReviewComment> comments = impl.fetchReviewCommentsForReport(reportId);
verifyMocks();
assertEquals(reviewComments.size(), comments.size());
}
// test the transition, were the physician can login to the system.
public void testNextTransitionsForAeReportWithAnInvestigatorHavingLogin() throws Exception {
Report report = Fixtures.createReport("testReport");
Investigator investigator = Fixtures.createInvestigator("tester");
investigator.setLoginId("hai");
report.getPhysician().setPerson(investigator);
report.setWorkflowId(1);
ReportSubmittability errorMessagesMock = registerMockFor(ReportSubmittability.class);
report.setStatus(ReportStatus.PENDING);
List<String> transitions = new ArrayList<String>();
transitions.add("test action");
transitions.add("Send to Physician for Review");
EasyMock.expect(wfService.nextTransitionNames(1, "SYSTEM_ADMIN")).andReturn(transitions);
EasyMock.expect(reportValidationService.isSubmittable(report)).andReturn(errorMessagesMock);
EasyMock.expect(errorMessagesMock.isSubmittable()).andReturn(true);
replayMocks();
List<String> filteredTransitions =
impl.nextTransitionNamesForReportWorkflow(report, "SYSTEM_ADMIN");
verifyMocks();
assertEquals(1, filteredTransitions.size());
}
public void testAddReportingPeriodReviewCommentWithId() {
Integer reportingPeriodId = 5;
String comment = "mycomment";
String userId = "userId";
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
rp.setReviewComments(new ArrayList<ReportingPeriodReviewComment>());
EasyMock.expect(rpDao.getById(reportingPeriodId)).andReturn(rp);
rpDao.modifyOrSaveReviewStatusAndComments(rp);
replayMocks();
impl.addReportingPeriodReviewComment(reportingPeriodId, comment, userId);
verifyMocks();
}
public void doJob() throws FileNotFoundException, IOException {
// Check if the database is empty
if (User.count() == 0) {
Fixtures.loadModels("default-data.yml"); // Default User
// load in pictures
Photo photo;
String path = new java.io.File(".").getCanonicalPath() + "/public/images/";
photo =
Photos.initFileToPhoto(path + "GreenTaijitu.png", "By Chinneeb via Wikimedia Commons");
peacePhotoID = photo.id;
photo = Photos.initFileToPhoto(path + "default.png", "Default Profile Photo");
defaultProfilePhotoID = photo.id;
photo = Photos.initFileToPhoto(path + "headerBG.png", "Default Header Background Photo");
defaultHeaderPhotoID = photo.id;
photo =
Photos.initFileToPhoto(path + "UT-Austin-Tower.jpg", "UT Austin via Wikimedia Commons");
Fixtures.loadModels("skinTemplates.yml"); // initial data for skin templates
Fixtures.loadModels("initial-data.yml"); // rest of the data
hashPasswords();
initFriends();
}
}
public void testAddReportReviewComment() {
Integer reportId = 10;
String comment = "mycomment";
String userId = "userId";
Report report = Fixtures.createReport("testReport");
report.setReviewComments(new ArrayList<ReportReviewComment>());
EasyMock.expect(reportDao.getById(reportId)).andReturn(report);
reportDao.save(report);
replayMocks();
impl.addReportReviewComment(reportId, comment, userId);
verifyMocks();
}
@Test
public void testProtoToPig() throws IOException {
AddressBook abProto = Fixtures.buildAddressBookProto();
Tuple abProtoTuple = tf_.newTuple(new DataByteArray(abProto.toByteArray()));
ProtobufBytesToTuple abProtoToPig =
new ProtobufBytesToTuple(AddressBook.class.getCanonicalName());
Tuple abTuple = abProtoToPig.exec(abProtoTuple);
assertEquals(
"{(Elephant Bird,123,[email protected],{(415-999-9999,HOME),(415-666-6666,MOBILE),(415-333-3333,WORK)}),(Elephant Bird,123,[email protected],{(415-999-9999,HOME),(415-666-6666,MOBILE),(415-333-3333,WORK)})},",
abTuple.toDelimitedString(","));
}
public void testIsEntityHavingSpecifiedReviewStatus() {
Report report = Fixtures.createReport("testReport");
report.setReviewStatus(ReviewStatus.DRAFT_INCOMPLETE);
boolean result = impl.isEntityHavingSpecifiedReviewStatus(null, report);
assertTrue(result);
report.setReviewStatus(null);
result = impl.isEntityHavingSpecifiedReviewStatus(ReviewStatus.DRAFT_INCOMPLETE, report);
assertFalse(result);
report.setReviewStatus(ReviewStatus.DRAFT_INCOMPLETE);
result = impl.isEntityHavingSpecifiedReviewStatus(ReviewStatus.DRAFT_INCOMPLETE, report);
assertTrue(result);
}
public void testFindAdverseEventReportingPeriods() {
String userId = "tester";
AdverseEventReportingPeriod rp = Fixtures.createReportingPeriod();
ExpeditedAdverseEventReport aeReport = Fixtures.createSavableExpeditedReport();
Report report = Fixtures.createReport("test report");
report.setStatus(ReportStatus.INPROCESS);
report.setReviewStatus(ReviewStatus.DRAFT_INCOMPLETE);
report.setWorkflowId(1);
rp.addAeReport(aeReport);
aeReport.addReport(report);
List<AdverseEventReportingPeriod> reportingPeriods =
new ArrayList<AdverseEventReportingPeriod>();
reportingPeriods.add(rp);
rp.setReviewStatus(ReviewStatus.DRAFT_INCOMPLETE);
rp.setWorkflowId(1);
AdverseEventReportingPeriodDTO rpDto = new AdverseEventReportingPeriodDTO();
ExpeditedAdverseEventReportDTO rDto = new ExpeditedAdverseEventReportDTO();
ReportDTO reportDto = new ReportDTO();
rDto.addReportDTO(reportDto);
List<String> possibleActions = new ArrayList<String>();
possibleActions.add("abc");
reportDto.setPossibleActions(possibleActions);
EasyMock.expect(
rpDao.findAdverseEventReportingPeriods(
(AdverseEventReportingPeriodForReviewQuery) EasyMock.anyObject()))
.andReturn(reportingPeriods);
EasyMock.expect(factory.createAdverseEventEvalutionPeriodDTO(rp, userId, true))
.andReturn(rpDto);
EasyMock.expect(factory.createAdverseEventReportDTO(aeReport, userId)).andReturn(rDto);
List rrList = new ArrayList<ReconciliationReport>();
EasyMock.expect(
reconciliationReportDao.search((ReconciliationReportQuery) EasyMock.anyObject()))
.andReturn(rrList)
.anyTimes();
replayMocks();
Participant participant = Fixtures.createParticipant("Joel", "biju");
Study study = Fixtures.createStudy("Hello");
Organization org = Fixtures.createOrganization("test org");
ReviewStatus reviewStatus = null;
ReportStatus reportStatus = null;
List<AdverseEventReportingPeriodDTO> dtos =
impl.findAdverseEventReportingPeriods(
participant, study, org, reviewStatus, reportStatus, userId, true);
verifyMocks();
assertEquals(1, dtos.size());
assertEquals(1, dtos.get(0).getAeReports().size());
}
public void testNextTransitionsForAeReportWithCompleteReports() throws Exception {
Report report = Fixtures.createReport("testReport");
report.setWorkflowId(1);
ReportSubmittability errorMessagesMock = registerMockFor(ReportSubmittability.class);
report.setStatus(ReportStatus.PENDING);
List<String> transitions = new ArrayList<String>();
transitions.add("test action");
transitions.add("Submit to Central Office Report Reviewer");
EasyMock.expect(wfService.nextTransitionNames(1, "SYSTEM_ADMIN")).andReturn(transitions);
EasyMock.expect(reportValidationService.isSubmittable(report)).andReturn(errorMessagesMock);
EasyMock.expect(errorMessagesMock.isSubmittable()).andReturn(true);
replayMocks();
List<String> filteredTransitions =
impl.nextTransitionNamesForReportWorkflow(report, "SYSTEM_ADMIN");
verifyMocks();
assertEquals(2, filteredTransitions.size());
}
