Exemple #1
0
 @Override
 public float execute_float(ProgramChromosome c, int n, Object[] args) {
   int size = size();
   DescriptiveStatistics stats = new DescriptiveStatistics();
   for (int i = 0; i < size; i++) {
     stats.addValue(c.execute_float(n, i, args));
   }
   return (float) stats.getSkewness();
 }
 /**
  * Copies source to dest.
  *
  * <p>Neither source nor dest can be null.
  *
  * <p>Acquires synchronization lock on source, then dest before copying.
  *
  * @param source SynchronizedDescriptiveStatistics to copy
  * @param dest SynchronizedDescriptiveStatistics to copy to
  * @throws NullPointerException if either source or dest is null
  */
 public static void copy(
     SynchronizedDescriptiveStatistics source, SynchronizedDescriptiveStatistics dest) {
   synchronized (source) {
     synchronized (dest) {
       DescriptiveStatistics.copy(source, dest);
     }
   }
 }
 /** {@inheritDoc} */
 @Override
 public synchronized void clear() {
   super.clear();
 }
 /** {@inheritDoc} */
 @Override
 public synchronized void addValue(double v) {
   super.addValue(v);
 }
 /** {@inheritDoc} */
 @Override
 public synchronized void setWindowSize(int windowSize) {
   super.setWindowSize(windowSize);
 }
Exemple #6
0
  public static void main(String[] args) {

    // TEST MEASURE
    //        Point p1 = new Point(-1d, -1d);
    //        Point p2 = new Point(2d, 3d);
    //        System.out.println(measure.d(p1, p2));
    //        System.out.println(measure.s(p1, p2));
    //        return;

    Double[][] data = FileHandler.readFile(fileName);

    // cannot display points if dimension is > 2
    if (data[0].length != 2) canDisplay = false;

    // build graphic points from coords' array
    buildPointsFromData(data);
    Config.computeBoundingRect(points);

    // init display
    if (canDisplay) {
      disp = new Display();
      disp.setVisible(true);
      for (Point p : points) {
        disp.addObject(p);
      }
    }

    testResults = new double[nbTests];

    for (int t = 0; t < nbTests; ++t) {

      // define K clusters and K temporary centres
      clusters = new ArrayList<Cluster>();
      for (int i = 0; i < K; ++i) {
        clusters.add(new Cluster());
      }
      setRandomCenters();
      for (Cluster c : clusters) {
        System.out.println("center for cluster " + c + ": " + c.getCenter());
      }

      if (canDisplay) pause(1000);

      // variables used in for loops
      double minDist, currDist, diff;
      Double[] prevCoords, newCoords;
      Cluster alloc;
      Point newCenter;

      for (int i = 0; i < maxIter; ++i) {

        if (canDisplay) {
          disp.setLabel("[ iteration #" + (i + 1) + " ]");
        } else {
          System.out.println("------> iteration #" + (i + 1));
        }

        // allocate points to group which center is closest
        for (Point p : points) {

          minDist = Config.MAX;
          alloc = clusters.get(0); // default initialization

          for (Cluster c : clusters) {
            currDist = measure.d(p, c.getCenter());
            if (currDist < minDist) {
              minDist = currDist;
              alloc = c;
            }
          }

          alloc.addPoint(p);
        }

        // recenter: calculate gravity centers for formed groups
        diff = 0;
        prevCoords = null;
        for (Cluster c : clusters) {

          // delete previous center if it not a Point of the Cluster
          if (canDisplay && !c.getPoints().contains(c.getCenter())) {
            disp.removeObject(c.getCenter());
          }

          if (stopOnConverge) {
            prevCoords = c.getCenter().getCoords();
          }

          newCenter = c.makeGravityCenter();

          if (stopOnConverge) {
            newCoords = c.getCenter().getCoords();
            for (int k = 0; k < prevCoords.length; ++k) {
              diff += Math.abs(prevCoords[k] - newCoords[k]);
            }
          }

          if (canDisplay) {
            disp.addObject(newCenter);
          } else {
            // System.out.println("\tcenter for " + c + ": " + c.getCenter());
            System.out.println(c.getCenter());
          }
        } // loop over clusters

        if (canDisplay) {
          disp.repaint();
        }

        // if Clusters' centers don't change anymore, then stop (algorithm converged)
        if (diff == 0 && stopOnConverge) {
          testResults[t] = (double) i;
          if (canDisplay) {
            disp.setLabel("[ Converged at iteration #" + (i) + " ]");
            disp.repaint();
          } else {
            System.out.println("[ Converged at iteration #" + (i) + " ]");
          }
          break;
        }

        pause(100);
      } // loop over iterations

      if (testResults[t] == 0) {
        System.out.println("!!!!!!!!!! Test #" + t + " did not converge.");
        if (stopOnConverge) return;
      }

      // reset display
      if (canDisplay && t + 1 < nbTests) {
        for (Point p : points) p.setCluster(null);
        for (Cluster c : clusters) disp.removeObject(c.getCenter());
      }
    } // loop over tests

    // display test results and compute means
    DescriptiveStatistics stats = new DescriptiveStatistics(testResults);
    System.out.println("=========> Results:");
    for (int t = 0; t < nbTests; ++t) {
      System.out.println("--> [ " + testResults[t] + " ]");
    }
    System.out.println("=========> Means: " + stats.getMean());
    System.out.println("=========> Std dev: " + stats.getStandardDeviation());
  }