/**
* Set the parameters for a neuron, specifying the neuron coordinates with a Point (see {@link
* HyperNEATTranscriber.CPPN#setTargetCoordinates(Point)}).
*
* @param point The coordinates for the neuron.
* @param neurons The neuron collection to set parameters for.
* @param bainIndex The index into the neuron collection to specify the neuron to set parameters
* for.
* @param cppn The CPPN to use to generate parameter values for the given neuron.
* @param addNewConfig Whether to add a new configuration object to the neuron collection (Set to
* TRUE if creating a new neuron collection).
*/
protected void setNeuronParameters(
Point point, NeuronCollection neurons, int bainIndex, CPPN cppn, boolean addNewConfig) {
if (enableBias || neuronTypesEnabled || neuronParamsEnabled) {
cppn.setTargetCoordinates(point);
cppn.resetSourceCoordinates();
cppn.query();
setNeuronParameters(neurons, bainIndex, cppn, addNewConfig);
}
}
/**
* Set the parameters for a synapse. NOTE: It is assumed that the source and target coordinates
* have already been set for the CPPN and that {@link HyperNEATTranscriber.CPPN#query()} or one of
* the other query methods has been called.
*
* @param synapses The synapse collection to set parameters for.
* @param bainIndex The index into the synapse collection to specify the synapse to set parameters
* for.
* @param cppn The CPPN to use to generate parameter values for the given synapse.
* @param disabled Whether the synapse should be disabled (by setting the parameter specified by
* {@link #synapseDisableParamName} to 0).
* @param addNewConfig Whether to add a new configuration object to the synapse collection (Set to
* TRUE if creating a new synapse collection).
*/
public void setSynapseParameters(
SynapseCollection synapses,
int bainIndex,
CPPN cppn,
boolean disabled,
boolean addNewConfig) {
if (synapseParamsEnabled || synapseTypesEnabled) {
if (synapseModelParamClassCount > 0) {
int classIndex = 0;
// If this synapse should be disabled and a specific parameter indicates this, and a
if (disabled && synapseDisableParamClassIndex >= 0) {
// Use config that has synapseDisableParamName set to 0.
classIndex = synapseDisableParamClassIndex;
} else {
classIndex = cppn.getSynapseParamClassIndex();
}
synapses.setComponentConfiguration(bainIndex, classIndex);
} else {
// Each synapse has its own configuration object.
SynapseConfiguration c =
(SynapseConfiguration)
(addNewConfig
? synapses.getConfigSingleton().createConfiguration()
: synapses.getComponentConfiguration(bainIndex));
int synapseType = cppn.getSynapseTypeIndex();
if (synapseTypesEnabled) {
c.setParameterValue(synapseModelTypeParam, synapseModelTypes[synapseType], true);
}
// Set parameters for the config.
for (int p = 0; p < synapseParamNames.length; p++) {
double v = cppn.getRangedSynapseParam(synapseType, p);
c.setParameterValue(synapseParamNames[p], v, true);
}
if (synapseDisableParamName != null && disabled) {
c.setParameterValue(synapseDisableParamName, 0, true);
}
if (addNewConfig) {
c.minimumEfficacy = connectionWeightMin;
c.maximumEfficacy = connectionWeightMax;
// Add the configuration to the synapse collection.
synapses.addConfiguration(c);
// Set the current synapse to use the new configuration.
synapses.setComponentConfiguration(bainIndex, bainIndex);
}
}
}
}
/**
* Set the parameters for a neuron. NOTE: It is assumed that the source and target coordinates
* have already been set for the CPPN and that {@link HyperNEATTranscriber.CPPN#query()} or one of
* the other query methods has been called.
*
* @param neurons The neuron collection to set parameters for.
* @param bainIndex The index into the neuron collection to specify the neuron to set parameters
* for.
* @param cppn The CPPN to use to generate parameter values for the given neuron.
* @param addNewConfig Whether to add a new configuration object to the neuron collection (Set to
* TRUE if creating a new neuron collection).
*/
public void setNeuronParameters(
NeuronCollection neurons, int bainIndex, CPPN cppn, boolean addNewConfig) {
int neuronType = cppn.getNeuronTypeIndex();
if (enableBias) {
((NeuronCollectionWithBias) neurons).setBias(bainIndex, cppn.getRangedBiasWeight(neuronType));
}
// Type and/or parameters for neuron.
if (neuronTypesEnabled || neuronParamsEnabled) {
// Each neuron has its own configuration object.
ComponentConfiguration c =
addNewConfig
? neurons.getConfigSingleton().createConfiguration()
: neurons.getComponentConfiguration(bainIndex);
if (neuronTypesEnabled) {
c.setParameterValue(neuronModelTypeParam, neuronModelTypes[neuronType], true);
}
if (neuronParamsEnabled) {
if (neuronModelParamClassCount > 0) {
int classIndex = cppn.getNeuronParamClassIndex();
neurons.setComponentConfiguration(bainIndex, classIndex);
} else {
// Set parameters for the config.
for (int p = 0; p < neuronParamNames.length; p++) {
double v = cppn.getRangedNeuronParam(neuronType, p);
c.setParameterValue(neuronParamNames[p], v, true);
}
}
}
if (addNewConfig) {
assert neuronModelParamClassCount == 0
: "Shouldn't be adding new neuron configs when using parameter classes.";
// Add the configuration to the neuron collection.
neurons.addConfiguration(c);
// Set the current neuron to use the new configuration.
neurons.setComponentConfiguration(bainIndex, bainIndex);
}
}
}