/**
* Generates output file for a clasification problem @ param Foutput Name of the output file @
* param real Vector of outputs instances @ param obtained Vector of net outputs
*
* @return Nothing
*/
public void generateResultsClasification(String Foutput, int[] real, int[] obtained) {
// Output file, classification problems
FileOutputStream out;
PrintStream p;
Attribute at = Attributes.getOutputAttribute(0);
// Check whether the output value is nominal or integer
boolean isNominal = (at.getType() == at.NOMINAL);
try {
out = new FileOutputStream(Foutput);
p = new PrintStream(out);
CopyHeaderTest(p);
// System.out.println("Longitudes "+real.length+" "+obtained.length);
for (int i = 0; i < real.length; i++) {
// Write the label associated to the class number,
// when the output is nominal
if (isNominal)
p.print(at.getNominalValue(real[i]) + " " + at.getNominalValue(obtained[i]) + "\n");
else p.print(real[i] + " " + obtained[i] + "\n");
}
p.close();
} catch (Exception e) {
System.err.println("Error building file for results: " + Foutput);
}
}
public void ejecutar() {
int i, j, l, m;
double alfai;
int nClases;
int claseObt;
boolean marcas[];
boolean notFound;
int init;
int clasSel[];
int baraje[];
int pos, tmp;
String instanciasIN[];
String instanciasOUT[];
long tiempo = System.currentTimeMillis();
/* Getting the number of differents classes */
nClases = 0;
for (i = 0; i < clasesTrain.length; i++) if (clasesTrain[i] > nClases) nClases = clasesTrain[i];
nClases++;
/* Shuffle the train set */
baraje = new int[datosTrain.length];
Randomize.setSeed(semilla);
for (i = 0; i < datosTrain.length; i++) baraje[i] = i;
for (i = 0; i < datosTrain.length; i++) {
pos = Randomize.Randint(i, datosTrain.length - 1);
tmp = baraje[i];
baraje[i] = baraje[pos];
baraje[pos] = tmp;
}
/*
* Inicialization of the flagged instaces vector for a posterior
* elimination
*/
marcas = new boolean[datosTrain.length];
for (i = 0; i < datosTrain.length; i++) marcas[i] = false;
if (datosTrain.length > 0) {
// marcas[baraje[0]] = true; //the first instance is included always
nSel = n_p;
if (nSel < nClases) nSel = nClases;
} else {
System.err.println("Input dataset is empty");
nSel = 0;
}
clasSel = new int[nClases];
System.out.print("Selecting initial neurons... ");
// at least, there must be 1 neuron of each class at the beginning
init = nClases;
for (i = 0; i < nClases && i < datosTrain.length; i++) {
pos = Randomize.Randint(0, datosTrain.length - 1);
tmp = 0;
while ((clasesTrain[pos] != i || marcas[pos]) && tmp < datosTrain.length) {
pos = (pos + 1) % datosTrain.length;
tmp++;
}
if (tmp < datosTrain.length) marcas[pos] = true;
else init--;
// clasSel[i] = i;
}
for (i = init; i < Math.min(nSel, datosTrain.length); i++) {
tmp = 0;
pos = Randomize.Randint(0, datosTrain.length - 1);
while (marcas[pos]) {
pos = (pos + 1) % datosTrain.length;
tmp++;
}
// if(i<nClases){
// notFound = true;
// do{
// for(j=i-1;j>=0 && notFound;j--){
// if(clasSel[j] == clasesTrain[pos])
// notFound = false;
// }
// if(!notFound)
// pos = Randomize.Randint (0, datosTrain.length-1);
// }while(!notFound);
// }
// clasSel[i] = clasesTrain[pos];
marcas[pos] = true;
init++;
}
nSel = init;
System.out.println("Initial neurons selected: " + nSel);
/* Building of the S set from the flags */
conjS = new double[nSel][datosTrain[0].length];
clasesS = new int[nSel];
for (m = 0, l = 0; m < datosTrain.length; m++) {
if (marcas[m]) { // the instance must be copied to the solution
for (j = 0; j < datosTrain[0].length; j++) {
conjS[l][j] = datosTrain[m][j];
}
clasesS[l] = clasesTrain[m];
l++;
}
}
alfai = alpha;
boolean change = true;
/* Body of the LVQ algorithm. */
// Train the network
for (int it = 0; it < T && change; it++) {
change = false;
alpha = alfai;
for (i = 1; i < datosTrain.length; i++) {
// search for the nearest neuron to training instance
pos = NN(nSel, conjS, datosTrain[baraje[i]]);
// nearest neuron labels correctly the class of training
// instance?
if (clasesS[pos] != clasesTrain[baraje[i]]) { // NO - repel
// the neuron
for (j = 0; j < conjS[pos].length; j++) {
conjS[pos][j] = conjS[pos][j] - alpha * (datosTrain[baraje[i]][j] - conjS[pos][j]);
}
change = true;
} else { // YES - migrate the neuron towards the input vector
for (j = 0; j < conjS[pos].length; j++) {
conjS[pos][j] = conjS[pos][j] + alpha * (datosTrain[baraje[i]][j] - conjS[pos][j]);
}
}
alpha = nu * alpha;
}
// Shuffle again the training partition
baraje = new int[datosTrain.length];
for (i = 0; i < datosTrain.length; i++) baraje[i] = i;
for (i = 0; i < datosTrain.length; i++) {
pos = Randomize.Randint(i, datosTrain.length - 1);
tmp = baraje[i];
baraje[i] = baraje[pos];
baraje[pos] = tmp;
}
}
System.out.println(
"LVQ " + relation + " " + (double) (System.currentTimeMillis() - tiempo) / 1000.0 + "s");
// Classify the train data set
instanciasIN = new String[datosReferencia.length];
instanciasOUT = new String[datosReferencia.length];
for (i = 0; i < datosReferencia.length; i++) {
/* Classify the instance selected in this iteration */
Attribute a = Attributes.getOutputAttribute(0);
int tipo = a.getType();
claseObt = KNN.evaluacionKNN2(1, conjS, clasesS, datosReferencia[i], nClases);
if (tipo != Attribute.NOMINAL) {
instanciasIN[i] = new String(String.valueOf(clasesReferencia[i]));
instanciasOUT[i] = new String(String.valueOf(claseObt));
} else {
instanciasIN[i] = new String(a.getNominalValue(clasesReferencia[i]));
instanciasOUT[i] = new String(a.getNominalValue(claseObt));
}
}
escribeSalida(
ficheroSalida[0], instanciasIN, instanciasOUT, entradas, salida, nEntradas, relation);
// Classify the test data set
normalizarTest();
instanciasIN = new String[datosTest.length];
instanciasOUT = new String[datosTest.length];
for (i = 0; i < datosTest.length; i++) {
/* Classify the instance selected in this iteration */
Attribute a = Attributes.getOutputAttribute(0);
int tipo = a.getType();
claseObt = KNN.evaluacionKNN2(1, conjS, clasesS, datosTest[i], nClases);
if (tipo != Attribute.NOMINAL) {
instanciasIN[i] = new String(String.valueOf(clasesTest[i]));
instanciasOUT[i] = new String(String.valueOf(claseObt));
} else {
instanciasIN[i] = new String(a.getNominalValue(clasesTest[i]));
instanciasOUT[i] = new String(a.getNominalValue(claseObt));
}
}
escribeSalida(
ficheroSalida[1], instanciasIN, instanciasOUT, entradas, salida, nEntradas, relation);
// Print the network to a file
printNetworkToFile(ficheroSalida[2], referencia.getHeader());
}
/** Function to stores header of a data file. */
private void readHeader() {
String attributeName;
Vector attributeValues;
int i;
name = Attributes.getRelationName();
// Create vectors to hold information temporarily.
attributes = new Vector();
Attribute at;
// store attribute inputs and of the header
for (int j = 0; j < Attributes.getInputNumAttributes(); j++) {
at = Attributes.getInputAttribute(j);
attributeName = at.getName();
// check if it is real
if (at.getType() == 2) {
float min = (float) at.getMinAttribute();
float max = (float) at.getMinAttribute();
attributes.addElement(new MyAttribute(attributeName, j));
MyAttribute att = (MyAttribute) attributes.elementAt(j);
att.setRange(min, max);
att.activate();
} else {
if (at.getType() == 1) // check if it is integer
{
int min = (int) at.getMinAttribute();
int max = (int) at.getMinAttribute();
attributes.addElement(new MyAttribute(attributeName, j));
MyAttribute att = (MyAttribute) attributes.elementAt(j);
att.setRange(min, max);
att.activate();
} else // it is nominal
{
attributeValues = new Vector();
for (int k = 0; k < at.getNumNominalValues(); k++) {
attributeValues.addElement(at.getNominalValue(k));
}
attributes.addElement(new MyAttribute(attributeName, attributeValues, j));
MyAttribute att = (MyAttribute) attributes.elementAt(j);
att.activate();
}
}
} // for
// store outputs of the header
at = Attributes.getOutputAttribute(0);
attributeName = at.getName();
int j = Attributes.getNumAttributes() - 1;
// check if it is real
if (at.getType() == 2) {
float min = (float) at.getMinAttribute();
float max = (float) at.getMinAttribute();
attributes.addElement(new MyAttribute(attributeName, j));
MyAttribute att = (MyAttribute) attributes.elementAt(j);
att.setRange(min, max);
att.activate();
} else {
if (at.getType() == 1) // check if it is integer
{
int min = (int) at.getMinAttribute();
int max = (int) at.getMinAttribute();
attributes.addElement(new MyAttribute(attributeName, j));
MyAttribute att = (MyAttribute) attributes.elementAt(j);
att.setRange(min, max);
att.activate();
} else // it is nominal
{
attributeValues = new Vector();
for (int k = 0; k < at.getNumNominalValues(); k++) {
attributeValues.addElement(at.getNominalValue(k));
}
attributes.addElement(new MyAttribute(attributeName, attributeValues, j));
MyAttribute att = (MyAttribute) attributes.elementAt(j);
att.activate();
}
}
// set the index of the output class
classIndex = Attributes.getNumAttributes() - 1;
}
