// constructor
public TQuery(String[] args) {
try {
long startTime = System.currentTimeMillis();
processArgs(args);
queryIndex = new QueryIndex(this);
queryLoader = new QueryLoader(this);
// print some stats on building the engine
String diffTime =
Num.formatNumberOneFraction(((double) (System.currentTimeMillis() - startTime)) / 1000);
int numFiles = vcfDataFiles.length + bedDataFiles.length + mafDataFiles.length;
System.err.println("\n" + diffTime + " Sec to build using " + IO.memory() + " of RAM");
System.err.println("\t" + numFiles + "\tData sources loaded");
System.err.println("\t" + dataSources.getRecordsLoaded() + "\tRecords indexed");
System.err.println("\t" + dataSources.getRecordsSkipped() + "\tRecords skipped\n");
// print summary of available filters
System.err.println(dataSources.fetchSummary());
queryFilesFromCmdLine();
// release file handles
queryLoader.closeTabixReaders();
} catch (Exception e) {
e.printStackTrace();
System.err.println("\nProblem with executing the TQuery!");
}
}
