public String getUOM(boolean isCD4Conclusion) {
if (!isCD4Conclusion) {
if (test != null && test.getUnitOfMeasure() != null) {
return test.getUnitOfMeasure().getName();
}
}
return "";
}
private List<IdValuePair> getTestsForTypeOfSample(TypeOfSample typeOfSample) {
List<Test> testList = TypeOfSampleUtil.getTestListBySampleTypeId(typeOfSample.getId(), false);
List<IdValuePair> valueList = new ArrayList<IdValuePair>();
for (Test test : testList) {
if (test.getOrderable()) {
valueList.add(new IdValuePair(test.getId(), TestService.getUserLocalizedTestName(test)));
}
}
return valueList;
}
private void setTestMapForAllTests() {
testIdToBucketList = new HashMap<String, TestBucket>();
concatSection_TestToBucketMap = new HashMap<String, TestBucket>();
testBucketList = new ArrayList<TestBucket>();
TestDAO testDAO = new TestDAOImpl();
List<Test> testList = testDAO.getAllActiveTests(false);
for (Test test : testList) {
TestBucket bucket = new TestBucket();
bucket.testName = TestService.getUserLocalizedTestName(test);
bucket.testSection = test.getTestSection().getLocalizedName();
testIdToBucketList.put(test.getId(), bucket);
testBucketList.add(bucket);
}
}
@Test
public void sample_save_should_form_test_to_sample_associations() throws Exception {
testService.createOrUpdate(referenceDataTest);
us.mn.state.health.lims.test.valueholder.Test savedTest = testDAO.getTestByName("Test Name");
assertEquals("Test Name", savedTest.getTestName());
assertEquals("New", savedTest.getTestSection().getTestSectionName());
referenceDataSample.addTest(
new MinimalResource(referenceDataTest.getId(), referenceDataTest.getName()));
typeOfSampleService.createOrUpdate(referenceDataSample);
TypeOfSample savedSample = typeOfSampleDAO.getTypeOfSampleByUUID(sampleUuid);
assertEquals("Sample Name", savedSample.getDescription());
assertEquals("Sample Name", savedSample.getLocalAbbreviation());
TypeOfSampleTest sampleTestAssoc =
typeOfSampleTestDAO.getTypeOfSampleTestForTest(savedTest.getId());
assertNotNull(sampleTestAssoc);
assertEquals(savedTest.getId(), sampleTestAssoc.getTestId());
assertEquals(savedSample.getId(), sampleTestAssoc.getTypeOfSampleId());
}
@Test
public void associate_tests_with_panel() throws Exception {
testService.createOrUpdate(referenceDataTest);
us.mn.state.health.lims.test.valueholder.Test savedTest = testDAO.getTestByName("Test Name");
assertEquals("Test Name", savedTest.getTestName());
assertEquals("New", savedTest.getTestSection().getTestSectionName());
referenceDataPanel.addTest(
new MinimalResource(referenceDataTest.getId(), referenceDataTest.getName()));
panelService.createOrUpdate(referenceDataPanel);
Panel savedPanel = panelDAO.getPanelByName("Panel Name");
assertNotNull(savedPanel);
assertEquals("Panel Name", savedPanel.getDescription());
List panelTestAssoc = panelItemDAO.getPanelItemsForPanel(savedPanel.getId());
assertNotNull(panelTestAssoc);
assertEquals(1, panelTestAssoc.size());
PanelItem panelItem = (PanelItem) panelTestAssoc.get(0);
assertEquals(savedTest.getId(), panelItem.getTest().getId());
}
private void setAnalysisForDateRange() {
AnalysisDAO analysisDAO = new AnalysisDAOImpl();
List<Analysis> analysisList =
analysisDAO.getAnalysisStartedOrCompletedInDateRange(lowDate, highDate);
for (Analysis analysis : analysisList) {
Test test = analysis.getTest();
if (test != null) {
TestBucket testBucket = null;
if (USER_TEST_SECTION_ID.equals(analysis.getTestSection().getId())) {
String concatedName =
analysis.getTestSection().getLocalizedName()
+ TestService.getUserLocalizedTestName(analysis.getTest());
testBucket = concatSection_TestToBucketMap.get(concatedName);
if (testBucket == null) {
testBucket = new TestBucket();
testBucket.testName = TestService.getUserLocalizedReportingTestName(test);
testBucket.testSection = analysis.getTestSection().getLocalizedName();
concatSection_TestToBucketMap.put(concatedName, testBucket);
}
} else {
testBucket = testIdToBucketList.get(test.getId());
}
if (testBucket != null) {
if (NOT_STARTED_STATUS_ID.equals(analysis.getStatusId())) {
testBucket.notStartedCount++;
} else if (inProgress(analysis)) {
testBucket.inProgressCount++;
} else if (FINALIZED_STATUS_ID.equals(analysis.getStatusId())) {
testBucket.finishedCount++;
}
}
}
}
}
protected ActionForward performAction(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
// The first job is to determine if we are coming to this action with an
// ID parameter in the request. If there is no parameter, we are
// creating a new TestAnalyte.
// If there is a parameter present, we should bring up an existing
// TestAnalyte to edit.
TestAnalyteTestResultActionForm dynaForm = (TestAnalyteTestResultActionForm) form;
String forward = FWD_SUCCESS;
request.setAttribute(ALLOW_EDITS_KEY, "false");
request.setAttribute(PREVIOUS_DISABLED, "true");
request.setAttribute(NEXT_DISABLED, "true");
// CHANGED
// String selectedTestId = (String) request.getParameter("Test");
List methods = new ArrayList();
MethodDAO methodDAO = new MethodDAOImpl();
methods = methodDAO.getAllMethods();
// Get tests/testsections by user system id
// bugzilla 2160
UserTestSectionDAO userTestSectionDAO = new UserTestSectionDAOImpl();
List testSections = userTestSectionDAO.getAllUserTestSections(request);
// bugzilla 2291
List tests = userTestSectionDAO.getAllUserTests(request, false);
List selectedAnalyteTypes = new ArrayList();
// bugzilla 1870
List selectedAnalyteIsReportables = new ArrayList();
List selectedAnalyteResultGroups = new ArrayList();
List selectedAnalyteIds = new ArrayList();
List selectedAnalyteNames = new ArrayList();
List selectedTestAnalyteIds = new ArrayList();
List testAnalyteLastupdatedList = new ArrayList();
List testResultResultGroups = new ArrayList();
List testResultResultGroupTypes = new ArrayList();
List testResultValueList = new ArrayList();
List dictionaryEntryIdList = new ArrayList();
List flagsList = new ArrayList();
// bugzilla 1845 add testResult sortOrder
List sortList = new ArrayList();
List significantDigitsList = new ArrayList();
List quantLimitList = new ArrayList();
List testResultIdList = new ArrayList();
List testResultLastupdatedList = new ArrayList();
Test test = new Test();
// FIXED BUG - NEED TO REFRESH SELECTIONS ON GOING INTO FORM
// get 3 drop down selections so we can repopulate
// String selectedTestSectionId = (String) dynaForm
// .get("selectedTestSectionId");
// String selectedMethodId = (String) dynaForm.get("selectedMethodId");
// String selectedTestId = (String) dynaForm.get("selectedTestId");
String selectedTestId = null;
String selectedTestSectionId = null;
String selectedMethodId = null;
// END BUG FIX
// initialize the form
dynaForm.initialize(mapping);
dynaForm.resetLists();
// bugzilla 1350 need to check if test has been selected so stray
// components don't display
if (!StringUtil.isNullorNill(selectedTestId)) {
// if test is selected enable the save button
request.setAttribute(ALLOW_EDITS_KEY, "true");
test.setId(selectedTestId);
TestDAO testDAO = new TestDAOImpl();
testDAO.getData(test);
TestAnalyteDAO testAnalyteDAO = new TestAnalyteDAOImpl();
List testAnalytes = testAnalyteDAO.getAllTestAnalytesPerTest(test);
TestResultDAO testResultDAO = new TestResultDAOImpl();
List testResults = testResultDAO.getAllActiveTestResultsPerTest(test);
DictionaryDAO dictDAO = new DictionaryDAOImpl();
if (testAnalytes != null && testAnalytes.size() > 0) {
for (int i = 0; i < testAnalytes.size(); i++) {
TestAnalyte ta = (TestAnalyte) testAnalytes.get(i);
selectedAnalyteTypes.add(ta.getTestAnalyteType());
// bugzilla 1870
selectedAnalyteIsReportables.add(ta.getIsReportable());
if (ta.getResultGroup() != null) {
selectedAnalyteResultGroups.add(ta.getResultGroup());
} else {
selectedAnalyteResultGroups.add("");
}
selectedAnalyteIds.add(ta.getAnalyte().getId());
selectedAnalyteNames.add(ta.getAnalyte().getAnalyteName());
selectedTestAnalyteIds.add(ta.getId());
}
if (testResults != null && testResults.size() > 0) {
for (int i = 0; i < testResults.size(); i++) {
TestResult tr = (TestResult) testResults.get(i);
testResultIdList.add(tr.getId());
testResultLastupdatedList.add(tr.getLastupdated());
testResultResultGroups.add(tr.getResultGroup());
testResultResultGroupTypes.add(tr.getTestResultType());
if (tr.getTestResultType()
.equals(SystemConfiguration.getInstance().getDictionaryType())) {
dictionaryEntryIdList.add(tr.getValue());
Dictionary dict = new Dictionary();
dict.setId(tr.getValue());
dictDAO.getData(dict);
// bugzilla 1847: use dictEntryDisplayValue
testResultValueList.add(dict.getDictEntryDisplayValue());
} else {
dictionaryEntryIdList.add("");
testResultValueList.add(tr.getValue());
}
if (tr.getFlags() == null) {
flagsList.add("");
} else {
flagsList.add(tr.getFlags());
}
// bugzilla 1845 add testResult sortOrder
if (tr.getSortOrder() == null) {
sortList.add("");
} else {
sortList.add(tr.getSortOrder());
}
if (tr.getSignificantDigits() == null) {
significantDigitsList.add("");
} else {
significantDigitsList.add(tr.getSignificantDigits());
}
if (tr.getQuantLimit() == null) {
quantLimitList.add("");
} else {
quantLimitList.add(tr.getQuantLimit());
}
}
}
isNew = false;
} else {
isNew = true;
}
} else {
isNew = true;
}
PropertyUtils.setProperty(dynaForm, "selectedAnalyteTypes", selectedAnalyteTypes);
// bugzilla 1870
PropertyUtils.setProperty(
dynaForm, "selectedAnalyteIsReportables", selectedAnalyteIsReportables);
PropertyUtils.setProperty(dynaForm, "selectedAnalyteResultGroups", selectedAnalyteResultGroups);
PropertyUtils.setProperty(dynaForm, "selectedAnalyteIds", selectedAnalyteIds);
PropertyUtils.setProperty(dynaForm, "selectedTestAnalyteIds", selectedTestAnalyteIds);
PropertyUtils.setProperty(dynaForm, "testAnalyteLastupdatedList", testAnalyteLastupdatedList);
PropertyUtils.setProperty(dynaForm, "selectedAnalyteNames", selectedAnalyteNames);
PropertyUtils.setProperty(dynaForm, "testResultResultGroups", testResultResultGroups);
PropertyUtils.setProperty(dynaForm, "testResultResultGroupTypes", testResultResultGroupTypes);
PropertyUtils.setProperty(dynaForm, "testResultValueList", testResultValueList);
PropertyUtils.setProperty(dynaForm, "testResultIdList", testResultIdList);
PropertyUtils.setProperty(dynaForm, "testResultLastupdatedList", testResultLastupdatedList);
PropertyUtils.setProperty(dynaForm, "dictionaryEntryIdList", dictionaryEntryIdList);
PropertyUtils.setProperty(dynaForm, "flagsList", flagsList);
// bugzilla 1845 add testResult sortOrder
PropertyUtils.setProperty(dynaForm, "sortList", sortList);
PropertyUtils.setProperty(dynaForm, "significantDigitsList", significantDigitsList);
PropertyUtils.setProperty(dynaForm, "quantLimitList", quantLimitList);
PropertyUtils.setProperty(dynaForm, "test", (test == null ? new Test() : test));
// sort three drop down lists
Collections.sort(testSections, TestSectionComparator.NAME_COMPARATOR);
// bugzilla 1844 - no longer sort by name but by description
Collections.sort(tests, TestComparator.DESCRIPTION_COMPARATOR);
Collections.sort(methods, MethodComparator.NAME_COMPARATOR);
PropertyUtils.setProperty(dynaForm, "testSections", testSections);
PropertyUtils.setProperty(dynaForm, "methods", methods);
PropertyUtils.setProperty(dynaForm, "tests", tests);
PropertyUtils.setProperty(dynaForm, "selectedTestSectionId", selectedTestSectionId);
PropertyUtils.setProperty(dynaForm, "selectedMethodId", selectedMethodId);
PropertyUtils.setProperty(dynaForm, "selectedTestId", selectedTestId);
return mapping.findForward(forward);
}
public String getSortOrder() {
return test == null ? "0" : test.getSortOrder();
}
public boolean isReportable() {
return test == null ? false : "Y".equals(test.getIsReportable());
}
public String getTestMethodName() {
return (test != null && test.getMethod() != null) ? test.getMethod().getMethodName() : null;
}
