protected void internal_importDataFile(String name, String datafile) {
// addDataFile(datafile);
rlLowerStore.importRDFData(name, datafile);
if (lazyUpperStore != null) lazyUpperStore.importRDFData(name, datafile);
elLowerStore.importRDFData(name, datafile);
trackingStore.importRDFData(name, datafile);
}
@Override
public boolean preprocess() {
t.reset();
Utility.logInfo("Preprocessing ... checking satisfiability ... ");
String name = "data", datafile = importedData.toString();
rlLowerStore.importRDFData(name, datafile);
rlLowerStore.materialise("lower program", program.getLower().toString());
// program.getLower().save();
if (!consistency.checkRLLowerBound()) return false;
Utility.logInfo(
"The number of sameAs assertions in RL lower store: " + rlLowerStore.getSameAsNumber());
String originalMarkProgram = OWLHelper.getOriginalMarkProgram(ontology);
elLowerStore.importRDFData(name, datafile);
elLowerStore.materialise("saturate named individuals", originalMarkProgram);
elLowerStore.materialise("lower program", program.getLower().toString());
elLowerStore.initialiseKarma();
if (!consistency.checkELLowerBound()) return false;
if (lazyUpperStore != null) {
lazyUpperStore.importRDFData(name, datafile);
lazyUpperStore.materialise("saturate named individuals", originalMarkProgram);
int tag = lazyUpperStore.materialiseRestrictedly(program, null);
if (tag != 1) {
lazyUpperStore.dispose();
lazyUpperStore = null;
}
if (tag == -1) return false;
}
if (consistency.checkLazyUpper()) {
satisfiable = true;
Utility.logInfo("time for satisfiability checking: " + t.duration());
}
trackingStore.importRDFData(name, datafile);
trackingStore.materialise("saturate named individuals", originalMarkProgram);
// materialiseFullUpper();
// GapByStore4ID gap = new GapByStore4ID(trackingStore);
GapByStore4ID gap = new GapByStore4ID2(trackingStore, rlLowerStore);
trackingStore.materialiseFoldedly(program, gap);
predicatesWithGap = gap.getPredicatesWithGap();
gap.clear();
if (program.getGeneral().isHorn())
encoder = new TrackingRuleEncoderWithGap(program.getUpper(), trackingStore);
else encoder = new TrackingRuleEncoderDisjVar1(program.getUpper(), trackingStore);
// encoder = new TrackingRuleEncoderDisj1(program.getUpper(), trackingStore);
// encoder = new TrackingRuleEncoderDisjVar2(program.getUpper(), trackingStore);
// encoder = new TrackingRuleEncoderDisj2(program.getUpper(), trackingStore);
program.deleteABoxTurtleFile();
if (!isConsistent()) return false;
consistency.extractBottomFragment();
return true;
}